Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00346 ATGGCCAGCAACACTGAACTCCTCCTCCAACGTTACCCTTTTTCTTCTTCTTTTAGATTTCTTCCCTTAACAACAACCACCACTCTCTCATTCTCTCTCCTTCGCCCTCGATCCCTTCCTTTTCCCCTCAAATTCCATGCCTCCTTCTCCTTCAAGTCCCCGACCTCAACCCTCCGCGCCTTCTCCGACGCCGAGGAGGACgaagaagacgatgaagaagatgatgaagaagaAGACCAAGACCATGACCAAGACAACGTTTCTGCCGACGAATACGACGACGTTTTGGGTGAGGCTTCCGACGACGAGGCCGACGTGTTCTCTCCGCACGATGGATTCAAGTGGCAGAGAGTCGACAAGCTATGCAACGAAGTCAGGGAGTTCGGCGCCGATCTCATCGACGTCGACGAGCTCGCCTCCGTCTACGACTTCCGCATCGACAAGTTTCAGCGGCAGGCGATACTGGCTTTTCTGAGAGGCTTCTCGGTGGTGGTTTCCGCTCCGACGAGCAGCGGGAAGACGCTGATTGCGGAGGCCGCGGCGGTGGCCACGGTGGCTAGGGGACGGAGAATATTCTACACGACGCCGCTCAAGGCGCTGTCCAATCAGAAGTTTCGCGAGTTCCGCGAGACTTTTGGCGGCAGTAATGTTGGCCTTCTCACGGGTGATTCTGCAGTGAACAAGGATGCTCAGGTTTTGATTATGACCACGGAGATATTGCGCAACATGTTGTATCAGAGTGTTGGTAATGTTTCTTCTGGAAGTGGACTTGTAAATGTTGATGTGATTGTTTTGGATGAAGTTCATTACCTTAGTGACATATCTCGTGGTACAGTCTGGGAGGAGATTGTTATTTATTGCCCTAAAGAAGTTCAACTTATTTGCCTGTCAGCAACTGTTGCAAATCCTGATGAGTTGGCTGGGTGGATTGGTCAGATTCATGGTGAAACAGAATTGGTAACATCATCAAAACGCCCAGTTCCATTGACTTGGCATTTCTCTCTGAAGAATTCCTTATTACCACTTCTTAACGAGAAAGGAACACACATGAACAGGAAACTGTCACTCAATTATTTACAACTTCAAGCTGCAGTGGCTAAACCTTACAAGGATGATTGGTCTAGAAAAAGGAATCCCCGGAAACGAGGAACTCTCTCAGGCTATGATAGTGATGATAACATGTTTGAACAACGTTCCCTTTCAAAGAATAACATAAATGCAATTCGTCGTTCACAAGTTCCTCAAGTAATTGATACATTATGGCAACTTCAGTCCAGGGATATGCTGCCAGCTATTTGGTTTATTTTTAGCAGGAAGGGTTGCGATGCGGCTGTGCAATATCTTGAAAATTGCAAACTTTTAGATGAGTGTGAATCAAGTGAGGTTGAACTAGCCTTGAAAAGGTTCCGCAAGCAGTACCCTGATGCTGTCAGAGAATCAGCTGTGAGAGGACTTTTGGAAGGTGTTGCTGCTCATCATGCTGGATGTCTACCTTTGTGGAAGGCATTCATAGAAGAGTTGTTTCAAAGAGGACTTGTCAAGGTTGTTTTTGCTACAGAAACCCTGGCTGCTGGAATCAATATGCCTGCTAGAACAGCTGTTATTTCATCCCTCAGCAAAAGAGGTGATAGTGGACGTATCCCATTAAGCTCAAATGAACTGCTTCAGATGGCTGGGCGTGCTGGACGCAGAGGCATTGATGAAAATGGTCATGTAGTTCTCATCCAAACTCCTAATGAAGGTGCTGAAGAGGGCTGCAAAGTACTGTTCGCTGGACTAGAGCCTCTAGTGTCACAGTTTACTGCTTCATATGGAATGGTTTTGAATCTTCTTGCTGGTGTGAAAGCCATTCATAGGTCAAATGAATCAGATAACATGAAACCTTCCACAGGTAAAACTTTGGAAGAAGCTAGGAAATTAGTTGAGCAGAGTTTTGGAAATTATGTTAGTAGCAACGTAATGCTGGCTGCTAAAGAAGAAATTAATAAAATTGAAAAAGAAATTGAGTTTCTGATGTCAGAAATTACTGATGAAGCCATAGATAGGAAAAGCAGGAAGGCTTTATCACCACGACAATACAAGGAAATTGCAGAATTACTGGAAGATTTAAGGGCAGAAAAGCGTGTTCGGTCTGAATTGCGGAAACAGAAGGAAGCAAAGAGAATATCTGCCCTGAAACCTTTGTTGGAGGAGCCCGAAAGTGGACATTTACCATTTTTGTGCTTGCAGTATAGAGATTCTGAAGGAGTTGAACATTCAATTCCTGCTGTGTTTTTGGGGAAGGTTGACTCCCTTAATGCTTCAAAACTCAAAGATATGATTTCTTCTGTTGATTCTTTTGCATTGAATTTAGCAGACGCAGAGCCAAGTGTCGCTGATTCTGAATTGAAGGATGATCTTAAACCATCATATCATGTGGCTCTTGGTTCAGATAACACATGGTATCTATTTACAGAAAAGTGGATTAAAACGGTATATGGGACAGGCTTTCCTAATGTTCCATTGGCTGAAGGGGATGCTCGACCTCGAGAAATTATGAGTATTCTCCTTGATAAGGAGGACATGAAGTGGGATAAGCTTTCTCACTCCGAGCATGGTGGTTTATGGTTCATGGAAGGATCTCTAGATACATGGTCTTGGAGCTTGAATGTTCCTGTTTTGAGTAGCTTGTCAGAAAATGATGAGCTACTACTACAGTCTCAAGACTACAAAGATGCCATTGAACGTTACAAGGAACAAAGAAATAAAGTTTCACGGTTGAAGAAAAAGATAGTTCGTAGTGAAGGCTATAAAGAATATTTTAAAATCATAGATGCAGTCAAGTTTACTGAGGAGAAAATCAAGCGCCTGAAGAATAGATCTAAACGTTTGATTAATAGGATAGAACAAATTGAGCCCTCGGGTTGGAAGGAGTTTATGCAGGTTAGCAATGTCATTCACGAAATCAGAGCTTTAGATATTAATACACATATCATATTTCCACTTGGTGAAACCGCTGCTGCAATTCGAGGAGAAAATGAGCTATGGCTTGCGATGGTTCTTCGCAATAAAATTTTACTAGAACTAAAACCTGCACAGCTTGCTGCAGTGTGCGCAAGTTTGGTGTCCGCGGGTATCAAAGTCCGACCTGGGAAAAATAACAGTTACATTTATGAGCCTTCTGCAACTGTAACCAAATTCATAACGTTATTGGATGAGCAAAGAAGTGCCTTATTGGCAATGCAGGATAAACATGAGGTGACAATCTCCTGCTGTTTGGATAGCCAGTTTTGTGGTATGGTTGAGGCCTGGGCTTCTGGGTTGACATGGAGAGAATTAATGATGGATTGTGCAATGGATGATGGTGATTTAGCTCGTCTCCTTCGACGGACCATTGATCTGTTAGTTCAGATTCCAAAATTGCCAGATATTGATCCATTGTTGAAGCACAATGCCAAGGCTGCTTCTAGTGTCATGGATCGGCCACCAATAAGTGAACTTGTGGGGTAA 3489 0.4334 MASNTELLLQRYPFSSSFRFLPLTTTTTLSFSLLRPRSLPFPLKFHASFSFKSPTSTLRAFSDAEEDEEDDEEDDEEEDQDHDQDNVSADEYDDVLGEASDDEADVFSPHDGFKWQRVDKLCNEVREFGADLIDVDELASVYDFRIDKFQRQAILAFLRGFSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFREFRETFGGSNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSGSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGETELVTSSKRPVPLTWHFSLKNSLLPLLNEKGTHMNRKLSLNYLQLQAAVAKPYKDDWSRKRNPRKRGTLSGYDSDDNMFEQRSLSKNNINAIRRSQVPQVIDTLWQLQSRDMLPAIWFIFSRKGCDAAVQYLENCKLLDECESSEVELALKRFRKQYPDAVRESAVRGLLEGVAAHHAGCLPLWKAFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGDSGRIPLSSNELLQMAGRAGRRGIDENGHVVLIQTPNEGAEEGCKVLFAGLEPLVSQFTASYGMVLNLLAGVKAIHRSNESDNMKPSTGKTLEEARKLVEQSFGNYVSSNVMLAAKEEINKIEKEIEFLMSEITDEAIDRKSRKALSPRQYKEIAELLEDLRAEKRVRSELRKQKEAKRISALKPLLEEPESGHLPFLCLQYRDSEGVEHSIPAVFLGKVDSLNASKLKDMISSVDSFALNLADAEPSVADSELKDDLKPSYHVALGSDNTWYLFTEKWIKTVYGTGFPNVPLAEGDARPREIMSILLDKEDMKWDKLSHSEHGGLWFMEGSLDTWSWSLNVPVLSSLSENDELLLQSQDYKDAIERYKEQRNKVSRLKKKIVRSEGYKEYFKIIDAVKFTEEKIKRLKNRSKRLINRIEQIEPSGWKEFMQVSNVIHEIRALDINTHIIFPLGETAAAIRGENELWLAMVLRNKILLELKPAQLAAVCASLVSAGIKVRPGKNNSYIYEPSATVTKFITLLDEQRSALLAMQDKHEVTISCCLDSQFCGMVEAWASGLTWRELMMDCAMDDGDLARLLRRTIDLLVQIPKLPDIDPLLKHNAKAASSVMDRPPISELVG 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00346 1162 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 412 611 IPR001650 -
Gma01g00346 1162 SMART helicmild6 479 565 IPR001650 -
Gma01g00346 1162 MobiDBLite consensus disorder prediction 63 88 - -
Gma01g00346 1162 Gene3D - 944 1154 - -
Gma01g00346 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 579 IPR027417 -
Gma01g00346 1162 Pfam DSHCT (NUC185) domain 992 1157 IPR012961 -
Gma01g00346 1162 CDD SF2_C_Ski2 409 577 - -
Gma01g00346 1162 SMART ultradead3 142 332 IPR014001 -
Gma01g00346 1162 Coils Coil 696 716 - -
Gma01g00346 1162 MobiDBLite consensus disorder prediction 58 88 - -
Gma01g00346 1162 Gene3D - 326 594 IPR027417 -
Gma01g00346 1162 Pfam DEAD/DEAH box helicase 149 301 IPR011545 GO:0003676|GO:0005524
Gma01g00346 1162 Coils Coil 940 960 - -
Gma01g00346 1162 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 51 1158 - -
Gma01g00346 1162 Gene3D - 108 325 IPR027417 -
Gma01g00346 1162 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 318 IPR014001 -
Gma01g00346 1162 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 51 1158 - -
Gma01g00346 1162 Coils Coil 654 674 - -
Gma01g00346 1162 Coils Coil 893 923 - -
Gma01g00346 1162 SMART DSHCT_2 987 1161 IPR012961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00346 Gma-Chr1 4098683 4106062 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00346 K26077 - gmx:100780908 2184.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00346 01 4098683 4106062 Gma01g00346 01 4098683 4106062 ECH
Gma01g00346 01 4098683 4106062 Gma02g00243 02 2452800 2456530 GST