Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00339 ATGGAGTGCGCGGCGAAGGGGAGCGGAGGAAGGTGCGGCGGCAGCGGCAGCGGCGGTGCCACAAGACTCTGCGCTCGCTGCGAAGCCGTTGCATATTGCTCTCTCTCTCACCAGATTGCACACTGGAGTCGTCACAAACACGAGTGCGATAGGTTGCAACAGCAATTGAAGAGTGTCGAAGTCCTCAATAATTTTCCCTTCACTTTCTCTCGCGAATCCACGTTTCAGGAAACTAGGTGTTCATTTTTTAGCAAGAGAGGCCTTCATCAAGTGGGAATGTGGATGCATGAATGCCATTGTGGAGCATCATCTACTTCATTTGATTGTTTAGGGTTAAACAATGGTTGGGATCTCCCAAGTAGTTTATGTCCCTGTTGTGAGCCTAGCTCTCCGGTATCAGAGCAGTTGCATTGTTGGAGAGACTACTATAAGTGGAGATGCATCCCGCTAGACTCGCCTGTTGCTTTGCTTCTTCAATGGCCACTTACAATATATCATGCTGCTCGACTTGTTGGAATTACAGCCTTGAATCCTGAAATCAGTGATAAGTTGTACATTCATTACCTTGGACCTGAGAAAGAGTTGCTACAACTTGCTGTGTTTGGAGAATTACTGGCACTCTTCCCCGGTGTACGAATTCATATAGAACTTGTTGGACCTGCAATTCCTCCTCAAAGGGATGGTGAGATGATTCACATTTCTAAGTATCCTTGTTGCAATGAAGACGAATGTGAATGCAAAATAGGAAGTAAAAATACATTCTTAGAAACACAATCTGGTATCACTTCCACTTTGACATTGCAACTTTGGCAAGGATTCTATCATGATCGATATAGAGATATTGTTAAGGATTCCTTTCCTCACCTAATAATTGCTCCAAATGGTGGCATTGCTGCTTATTCCAGTTGGTTACCAAGTATTGAGTTAATTAAAAAGATTGATGTCCCAGTTGTTTTTACTGATTATTGTGAAGAAGCTTGTCATCTTGCAGCCAATTGCATTAAGACTGTAACTGGAAGTCCTCTTAAATTGCCTGTTCAGTTAAATCCTTTCAGACAGCCCATGGCTGTGGAAGACAGCGTGCTGTTGCTTCCCTGCTACTCGAATTGTTATCTTTTTGGGATGTAA 1128 0.4362 MECAAKGSGGRCGGSGSGGATRLCARCEAVAYCSLSHQIAHWSRHKHECDRLQQQLKSVEVLNNFPFTFSRESTFQETRCSFFSKRGLHQVGMWMHECHCGASSTSFDCLGLNNGWDLPSSLCPCCEPSSPVSEQLHCWRDYYKWRCIPLDSPVALLLQWPLTIYHAARLVGITALNPEISDKLYIHYLGPEKELLQLAVFGELLALFPGVRIHIELVGPAIPPQRDGEMIHISKYPCCNEDECECKIGSKNTFLETQSGITSTLTLQLWQGFYHDRYRDIVKDSFPHLIIAPNGGIAAYSSWLPSIELIKKIDVPVVFTDYCEEACHLAANCIKTVTGSPLKLPVQLNPFRQPMAVEDSVLLLPCYSNCYLFGM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00339 375 Gene3D - 9 57 - -
Gma01g00339 375 Pfam MSS51 C-terminal domain 161 359 IPR046824 -
Gma01g00339 375 SUPERFAMILY HIT/MYND zinc finger-like 19 54 - -
Gma01g00339 375 PANTHER ZINC ION BINDING PROTEIN 1 375 - -
Gma01g00339 375 ProSiteProfiles Zinc finger MYND-type profile. 12 49 IPR002893 -
Gma01g00339 375 PANTHER ZINC ION BINDING PROTEIN 1 375 - -
Gma01g00339 375 Pfam MYND finger 12 49 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00339 Gma-Chr1 4037350 4041466 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00339 K24081 - gmx:100808017 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00339 01 4037350 4041466 Gma01g00339 01 4037350 4041466 ECH
Gma01g00339 01 4037350 4041466 Gma02g00250 02 2507364 2516274 GST