Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00303 ATGCTATGCTCTCTAATCCGTATCCGCCGTCACGCTCCTTTCCACCACACTCTCCGCTCTCTCTTGCCGATTAACCGTTTCTCCTCCTCCTCCTCCTCCTCCGCCTCCGCCGCCGCCGCCGCCGCCATGGTTGCTCACGCGAAGGACGAGGCGTACCTTAGCGCGGCGATTCCGAAGCGCGTCCGTCTCTTCGAGACCATCCAGGCGGAGCAGCGCACGCAGCGCCTCTCGCTTTCGCCGGATCCTATCAAGGTCACTCTCCCCGACGGCAACGTCAAGGACGCGAAGAAGTGGCTCTCGACGCCGCTCGACGTGGCGCGCGAAATCTCGAAGAATTTGGCCAACAGCGCGCTCATCGCGAAGGTCAATGGCGTGCTCTGGGACATGACGCGCCCTCTCGAGGACGACTGCCAGCTCCAGATCTTCAAGTTCGACGACGACGAAGGCCGCGACACCTTCTGGCACTCCAGCGCTCACATTCTCGGCCAGTCACTTGAGACGGAGTATGGATGCAAGCTATGCATTGGGCCTTGCACTACAAGAGGAGAGGGGTTCTATTATGATGCGTTTTACGGGGACTTGGGTCTCAATGACGATCACTTTAAGCAGATTGAGGCTGGAGCATTGAAGGCTGTTGCGGAAAAGCAACCCTTTGAGCGCATTGAAGTTACACGCGATCAGGCACTTGAGATGTTTTCAGATAATAAGTTTAAGATCGAGATTATCAATGATTTGCCTGCCGACAAAACTATCACAGTATACAGATGTGGTCCCTTGGTGGATTTGTGTCGTGGGCCCCATATACCTAATACATCCTTTGTCAAAGCAATTGCGTGTTTAAAGGCTTCATCAGCATATTGGAGGGGGGACAAAGATCGGGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAAAGTCTGAAGGAATACTTGCATCGGCTGGAGGAGGCTAAAAAGTATGATCACAGGATTTTGGGTGTGAAACAGGAGCTTATTCTTCATCATGAATGGAGTCCGGGAAGCTGGTTTTTTCTTCCACATGGCGCTCGGATCTACAACAAACTCATGGACTTCATTCGGAATCAGTACAGGGACAGAGGCTATCAAGAGGTCATATCTCCAAATGTATTTAACATGGATCTATGGGTGCAATCTGGTCATGCTGCAAATTATAGGGAGGATATGTTTATCTTAGAGGTTGACAAACAAGAGTTTGGGTTGAAACCAATGAATTGCCCAGGGCACTGCCTGATGTTTAAACACAGGGTTCGATCATATAGAGAACTTCCTCTTCGCTTTGCTGATTTTGGGGTTTTGCATCGGAATGAGGCTAGTGGTGCCCTGAGTGGATTAACACGTGTTAGGAGATTTCAGCAGGATGATGCACATATTTTCTGCAGGGAGTCCCAGATAAAGGATGAAGTGAGGAATGGCTTGAATTTCATCAATTATGTCTATAAGATATTTGGTTTCACGTATGAGCTGAAGCTTTCAACGAGGCCAGAGAAATACCTAGGAGATATTGCAACTTGGGACAAAGCTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAGTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTAATGATACACAGAGCCATCCTAGGATCTGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCTTTCTGGCTCAGTCCTCGTCAAGCGATTGTATGCCCTGTGTCTGAAAAGTCACAATCTTATGCACTACAGGTGCGAGATCAGATCCACCAAGCAGGGTATCACGTTGATGCTGATACAACTGATAGGAAGATTCAGAAAAAGGTACGAGAAGCACAGTTAGCACAATACAACTTCATATTGGTTGTTGGAGAGGAGGAAGCTAATTCAGGACAGGTGAGTGTACGAGTTAGAGACTTGGCAGAACATAAGGTTATGAGTATTGAGAAACTACTTGAACATTTCAGAGACAAAACTGCAGCTTTCGAATGA 2154 0.4754 MLCSLIRIRRHAPFHHTLRSLLPINRFSSSSSSSASAAAAAAMVAHAKDEAYLSAAIPKRVRLFETIQAEQRTQRLSLSPDPIKVTLPDGNVKDAKKWLSTPLDVAREISKNLANSALIAKVNGVLWDMTRPLEDDCQLQIFKFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAVAEKQPFERIEVTRDQALEMFSDNKFKIEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGARIYNKLMDFIRNQYRDRGYQEVISPNVFNMDLWVQSGHAANYREDMFILEVDKQEFGLKPMNCPGHCLMFKHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNGLNFINYVYKIFGFTYELKLSTRPEKYLGDIATWDKAESALKEALDDFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALQVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNFILVVGEEEANSGQVSVRVRDLAEHKVMSIEKLLEHFRDKTAAFE 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00303 717 SUPERFAMILY ThrRS/AlaRS common domain 145 322 IPR018163 GO:0000166
Gma01g00303 717 ProSiteProfiles TGS domain profile. 81 143 IPR004095 -
Gma01g00303 717 Hamap Threonine--tRNA ligase [thrS]. 148 715 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gma01g00303 717 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 349 615 IPR006195 -
Gma01g00303 717 Gene3D - 146 304 - -
Gma01g00303 717 Pfam Anticodon binding domain 622 711 IPR004154 -
Gma01g00303 717 PANTHER THREONINE-TRNA LIGASE 46 716 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gma01g00303 717 Gene3D - 81 142 IPR012675 -
Gma01g00303 717 SUPERFAMILY TGS-like 83 143 IPR012676 -
Gma01g00303 717 CDD TGS_ThrRS 83 148 - -
Gma01g00303 717 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 405 610 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma01g00303 717 SMART tRNA_SAD_4 251 300 IPR012947 GO:0004812|GO:0005524|GO:0043039
Gma01g00303 717 Gene3D Bira Bifunctional Protein; Domain 2 306 613 IPR045864 -
Gma01g00303 717 PRINTS Threonyl-tRNA synthetase signature 410 438 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gma01g00303 717 PRINTS Threonyl-tRNA synthetase signature 443 466 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gma01g00303 717 PRINTS Threonyl-tRNA synthetase signature 544 572 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gma01g00303 717 PRINTS Threonyl-tRNA synthetase signature 588 601 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gma01g00303 717 PRINTS Threonyl-tRNA synthetase signature 615 627 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gma01g00303 717 SUPERFAMILY Class II aaRS ABD-related 608 712 - -
Gma01g00303 717 TIGRFAM thrS: threonine--tRNA ligase 154 712 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Gma01g00303 717 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 46 716 - -
Gma01g00303 717 Pfam TGS domain 83 143 IPR004095 -
Gma01g00303 717 CDD ThrRS_core 324 620 IPR033728 -
Gma01g00303 717 CDD ThrRS_anticodon 620 710 - -
Gma01g00303 717 SUPERFAMILY Class II aaRS and biotin synthetases 324 607 IPR045864 -
Gma01g00303 717 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 251 300 IPR012947 GO:0004812|GO:0005524|GO:0043039
Gma01g00303 717 Gene3D - 614 716 IPR036621 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00303 Gma-Chr1 3466627 3476968 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00303 K01868 - gmx:100812652 1438.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00303 01 3466627 3476968 Gma01g00303 01 3466627 3476968 ECH
Gma01g00303 01 3466627 3476968 Gma02g00291 02 3056888 3067453 GST