Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00293 ATGGCGGATTCCGCCTCTTCCCCCGCAACCCTTCCTCCCAATCCCCAACCCTCCCAATCCGCACCCGATCTACTCTCCCAATCCGCAACACCACCCTCATCCACTCCCCTCGCCACAAACCCTAATCCCAACCCAACGCTGCTTCCTCCGCCGCCCACTCTCCACTTTCTGGCGGGCACTCCGCCGCAGGTCCCCGGCGTCCTCCCTCCCTCTTTCCGGCCGCTCGGGCCTCAGGTGCCGCAATTCTCCCCCGTCCCGGCGCCCAACCCGGCCTACCAAAACCCTGCTGTCCCGCCGCCCGGCGTTCCCGGCGCCACCGTGGCAGTTCCGCCGCCGCAGATGCAGGCTATGATGTCGTACCAGGTTCAGCCCGGTAACCCGGCCATGCGGCCCTTCGCTCCGATCCCTAACGGCTACGCCGCAGCTCCGAACGTAACTCCCGCGGGAATTCCTCGTTACCCCCCTCCTTATGGAACTATGGTTCGTCCTGTATTTCCTGCACGCCCTCCTGGAGCAGTTAACATACCTACTATATCACGCCCACCAGTTGCAGGGATCCCTGCAGTTCGCCCAATTATTCCTCCTGTTGTCAGACCTGTGGTTGCCCCTAGTGTTACTCCAGCTGAGAAGCCTCAAAACACAGTTTACATTGGCAAGATTGCACCAACTGTGGAAAATGAGTTCATGCTCTCTCTCCTTCAATTATGTGGAACTATCAAGACCTGGAAACGTCCTCAGGATTTATCAACTGGAACTCCTACAAGTTTTGGGTTTTATGAGTTTGAGTCTGCAGAAGGGGTTCTCCGGGCCTTGCGTCTCCTTACTAAACTGAATATTGATGGGCAAGAACTGAAGGTCAACGTGAATCAAGCTATGAAAGAAATTCTGGAGCTGTATGTTAAGACAAAAACTGAGAACTTGAAGAACAAAGAAACTCAGGAAGTAGGTGAAAAAAATGAAGGTGAACAACCTTCTAATGCAAACGAGGATGCAAAGGTTGACACAGAACCCTCAAATAAAGAGGCTAGTGAATCATCAAACAAGGAATCCCATGATGTGGCAAACTTTGGGATTGTCACGGATGAAGATAGAGAAGCTGATTGTGAGGCTTTAGAAAAGATTACAAAGATGATAGAGGAAAGGTTGAAGACTAGACCTTTGCCTACACCACCTGCACAGCCAACTGGTGATGGTTCTGTAAATTTAACTTCTGAACAACCTGTTAAAGCCCGAGATGGAGACTCTGTTGTGGATACAGAGAAGAATGAATCTGCTGAAAATAAAAATGAGAAAGAGACGAACAATGATAACAAACCAACCAGTGAACATGAAAGGACTGAAAGCCCTGATAGAAGGCATGATAGAAAAAGCAGAGAGAGGGACCGAGATAGGGAGCTAAAACGAGAAAAAGATAGAGAACTTGAAAGATATGAAAGAGAAGCAGAGCGGGAACGTGTTCGGAAAGAGAGGGAACAAAGACGAAGGGTTGAGGAGGCTGAGCGTCAGTATGAAACATATTTGAAGGATTGGGAGTATAGGGAACGAGAGAAAGAGAAAGAGCGTCAGTATGAAAAAGAGAAGGAGAAGGAAAGGGAGCGTAAAAGGAGAAAGGAGATACTTTATGATGAAGAGGATGAGGATGAGGATTCTAGGAAGAGATGGCGCAGAAGTGTGATAGAGGAGAAGAGAAAGAAGAGGCTGCGTGAGAAGGAAGATGACCTGGTTGACCGACAAAAAGAAGAGGAAGAAATTGCTGAGGCCAAAAAGAAGGCTGAGGAGGAACAAAAGCGACAAAGAGATGCATTAAAGCTTTTATCTGAGCATGTGGTAAATGGTGGTAAGGAAAATATGATTACTGAAGAGATTACTAATGAAGTTAAAAGCATTGTTGTTGAACAAGATACTGTAGCTGACTATAGTCGTGAAGATCATATTGGTGACGGTAATTCAATAAATGTCATCATTGATGAATCAACCATAGCATCTGTTGCTCCAACTGATGCACAGTCAGGTGGCAATGCTCCTACAAAGAAATTGGGGTTTGGTCTAGTTGGTTCAGGGAAAAGAACATCTGTCCCTTCTGTTTTCCATGAAGAGGATGATGATGATGCACACAAGGACAAAAAAATGAGGCCATTGGTTCCAATTGATTACTCAACTGAAGAATTGCAGGCTGTTCAACCTACAGTTTCTGGGCCAACACCACCAAATTTGGCTGCTGCTGCAGAATTTGCAAAGCGTATATCCAGTACAAATTTCAAGGAAGAGAAGCTGGATGGAGAACGGGATAGAAGTAGGCGTTCAAATGAGAAGTCTAACCACCGGGACAGGAGTGATGAAGATGGCACGCACAACAGAGATGAAAACAAGGAGAGAATTCCTGGCCGTGACAGGGATCGAGATCATGGATCGGAGAAACTCAAAACTTCTGATAATAAGAGGCTTTTGGATGCAAAACAATTGATTGATATGATACCAAAGACCAAGGAGGAGTTGTTCTCATATGAGATAGACTGGGCAGTGTATGATAAGCATCAATTACATGATAGAATGAGACCGTGGATTTCAAAGAAAATCAAAGAGTTTTTGGGGGAAGAAGAAACTACATTGATAGATTATATTGTTTCCAGTACACAAGAACATGTGAAAGCATCACAAATGCTTGAGCGACTTCAGATAATTTTGGATGAAGAGGCTGAAATGTTCGTTCTGAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAGGTAGAGTCGGGGCTAGCTTTGAGGTCAAAATCATGA 2784 0.4612 MADSASSPATLPPNPQPSQSAPDLLSQSATPPSSTPLATNPNPNPTLLPPPPTLHFLAGTPPQVPGVLPPSFRPLGPQVPQFSPVPAPNPAYQNPAVPPPGVPGATVAVPPPQMQAMMSYQVQPGNPAMRPFAPIPNGYAAAPNVTPAGIPRYPPPYGTMVRPVFPARPPGAVNIPTISRPPVAGIPAVRPIIPPVVRPVVAPSVTPAEKPQNTVYIGKIAPTVENEFMLSLLQLCGTIKTWKRPQDLSTGTPTSFGFYEFESAEGVLRALRLLTKLNIDGQELKVNVNQAMKEILELYVKTKTENLKNKETQEVGEKNEGEQPSNANEDAKVDTEPSNKEASESSNKESHDVANFGIVTDEDREADCEALEKITKMIEERLKTRPLPTPPAQPTGDGSVNLTSEQPVKARDGDSVVDTEKNESAENKNEKETNNDNKPTSEHERTESPDRRHDRKSRERDRDRELKREKDRELERYEREAERERVRKEREQRRRVEEAERQYETYLKDWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSVIEEKRKKRLREKEDDLVDRQKEEEEIAEAKKKAEEEQKRQRDALKLLSEHVVNGGKENMITEEITNEVKSIVVEQDTVADYSREDHIGDGNSINVIIDESTIASVAPTDAQSGGNAPTKKLGFGLVGSGKRTSVPSVFHEEDDDDAHKDKKMRPLVPIDYSTEELQAVQPTVSGPTPPNLAAAAEFAKRISSTNFKEEKLDGERDRSRRSNEKSNHRDRSDEDGTHNRDENKERIPGRDRDRDHGSEKLKTSDNKRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHDRMRPWISKKIKEFLGEEETTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVESGLALRSKS 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00293 927 MobiDBLite consensus disorder prediction 379 499 - -
Gma01g00293 927 SUPERFAMILY RNA-binding domain, RBD 198 288 IPR035979 GO:0003676
Gma01g00293 927 Gene3D PWI domain 806 922 - -
Gma01g00293 927 Coils Coil 564 608 - -
Gma01g00293 927 MobiDBLite consensus disorder prediction 309 361 - -
Gma01g00293 927 ProSiteProfiles PWI domain profile. 830 927 IPR002483 GO:0006397
Gma01g00293 927 MobiDBLite consensus disorder prediction 688 709 - -
Gma01g00293 927 MobiDBLite consensus disorder prediction 394 408 - -
Gma01g00293 927 SUPERFAMILY PWI domain 848 915 IPR036483 GO:0006397
Gma01g00293 927 MobiDBLite consensus disorder prediction 20 35 - -
Gma01g00293 927 Coils Coil 460 509 - -
Gma01g00293 927 MobiDBLite consensus disorder prediction 567 599 - -
Gma01g00293 927 MobiDBLite consensus disorder prediction 693 709 - -
Gma01g00293 927 MobiDBLite consensus disorder prediction 514 534 - -
Gma01g00293 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Gma01g00293 927 Coils Coil 512 540 - -
Gma01g00293 927 MobiDBLite consensus disorder prediction 309 348 - -
Gma01g00293 927 MobiDBLite consensus disorder prediction 411 499 - -
Gma01g00293 927 MobiDBLite consensus disorder prediction 1 69 - -
Gma01g00293 927 MobiDBLite consensus disorder prediction 36 69 - -
Gma01g00293 927 Pfam PWI domain 850 913 IPR002483 GO:0006397
Gma01g00293 927 CDD RRM_RBM25 214 296 IPR034268 -
Gma01g00293 927 MobiDBLite consensus disorder prediction 751 811 - -
Gma01g00293 927 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 927 - -
Gma01g00293 927 SMART pwi_2 843 916 IPR002483 GO:0006397
Gma01g00293 927 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 927 - -
Gma01g00293 927 SMART rrm1_1 214 287 IPR000504 GO:0003723
Gma01g00293 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 285 IPR000504 GO:0003723
Gma01g00293 927 Gene3D - 206 295 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00293 Gma-Chr1 3312261 3319276 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00293 K12822 - gmx:100809428 1499.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00293 01 3312261 3319276 Gma01g00293 01 3312261 3319276 ECH
Gma01g00293 01 3312261 3319276 Gma02g00305 02 3193075 3199670 GST