Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00138 ATGACGATAAAAACTGTTAAAGTCAGTAACGTTTCCTTGGGAGCAACTGAGCAAGACATTAAGGAGTTCTTTTCATTTTCTGGTGATATTGAATATGTTGAACTACGGAGCCATGATGAACGATCTCAAATTGCTTATATTACCTTCAAGGATTCACAGGGAGCTGAGACTGCACTACTGCTTTCAGGGGCAACAATAGTCGATATGCCAGTTACAATAACTCAGGATCCAGATTACCAGCTTCCACCTGCTGCGTTAGCGTCATCTGTAAGAGAAACTCAAACTCCTGGTGGTGCTGACTCTGCTTTACGGAAGGCAGAGGATGTGGTCTCCGGCATGCTAGCCAAGGGCTTTATCTTAGGAAAAGATGCTGTCAACAAAGCAAAGACCTTTGATGAGAAGCACCAGTTATCGTCGACAGCCTCAGCAAAAGTTGCATCTTTCGATCAGAAAATTGGGCTTAGCGAGAAAATAAGTGCTGGAGCTACAGTAGTGAGTGATAGAGTTCGAGAAGTGGACCAAAAGTTCCAGGTTTCAGAAAAGACCAAATCAGCATTTGCTGCTGCAGAACAGACAGTGAGTAATGCTGGCTCTGCCCTAATGAAGAATCGCTATGTGCTTACTGGGGCATCCTGGGTAACTGGCGCTTTTAGTAAGGTTTCTAAGGCGGCTGGGGAAGTAGGACAGAAGACAAAAGAGAAAGTAGAGGGTGCAGAAGAACATCAGAAACGAAAAGTGGAAGATCAATATGCACAAGTCCTTTCTGAGTCCCCAAAAGCAGCAGAAGCAAGTGAGCAGAAATCTTCCAAGCCTGCTCCTGCTCAGGGTTTGATCCTTTGA 840 0.4488 MTIKTVKVSNVSLGATEQDIKEFFSFSGDIEYVELRSHDERSQIAYITFKDSQGAETALLLSGATIVDMPVTITQDPDYQLPPAALASSVRETQTPGGADSALRKAEDVVSGMLAKGFILGKDAVNKAKTFDEKHQLSSTASAKVASFDQKIGLSEKISAGATVVSDRVREVDQKFQVSEKTKSAFAAAEQTVSNAGSALMKNRYVLTGASWVTGAFSKVSKAAGEVGQKTKEKVEGAEEHQKRKVEDQYAQVLSESPKAAEASEQKSSKPAPAQGLIL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00138 279 PANTHER BINDING PARTNER OF ACD11 1 1 265 - -
Gma01g00138 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 66 IPR000504 GO:0003723
Gma01g00138 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Gma01g00138 279 MobiDBLite consensus disorder prediction 228 279 - -
Gma01g00138 279 SMART rrm1_1 5 74 IPR000504 GO:0003723
Gma01g00138 279 SUPERFAMILY RNA-binding domain, RBD 4 82 IPR035979 GO:0003676
Gma01g00138 279 Gene3D - 2 74 IPR012677 -
Gma01g00138 279 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 265 - -
Gma01g00138 279 MobiDBLite consensus disorder prediction 228 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00138 Gma-Chr1 1541194 1544707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00138 - - gmx:100809613 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00138 01 1541194 1544707 Gma01g00138 01 1541194 1544707 ECH
Gma01g00138 01 1541194 1544707 Gma09g01921 09 44827530 44831427 GST