Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1786 ATGGAGTTCCTCACTTTACTGTATGTTGTTCCAGTATTGTACTTGTGTTTCCTGATGTGGAAGGTGTTTGATGAAAGAAGGGACCAGGAGTGCTACGTATTGGACTACCAGTGCCATAAGCCAACCGATGATAGAAAGCTTGGCACCGAGTTTTGTGGTAAAATCATCGCGAGAAACCAGCACCTGGGCCTCGACGAGTACAAGTTTATTCTCAAAGCTATTGTCAGCTCCGGCATTGGGGAGCAAACTTATGCCCCAAGAAACTTCTTCTTCGGGCGTGAGGCTAACCCCACATTGACAGATGTGATCTCTGAGATGGAGGAATTCTTCTGTGACAGCATTGCCAAGCTCTTGGCCAGATCAGCCATTTCTCCCTCAGAGATCGATGTTCTTGTGGTCAATGTCTCCATGTTCGCTGCTGTTCCTTCCTTATCTGCTCGAATCATAAACCAATACAAAATGAGGGAGGACATCAAGGCTTACAATCTCACTGGTATGGGTTGCAGTGCTAGCCTTATTTCTTTGGATTTTATTAAGAGTATTTTCAAGTCACAAAAGAACAAGTACGCTCTTTTGGTGACTTCAGAGTCTCTCAGTCCAAATTGGTATTCTGGTAATGACAGATCAATGATTCTTACCAACTGTTTGTTCCGGTCTGGAGGGTGTGTCATTCTTTTGACCAACAAAAGGTCGTTGAAGCACAAAGCCATGTTGAAATTGAAGTGCTTAGTGAGGACGCATCATGGGGCTCAAGATGAGGCCTATGGTTGTTGCCTTCAAAAGGAAGATGACCAAGGCAGGCTTGGGTTTCACCTTGGGAAAAGTCTCCCCAAGGCAGCTACAAGGGCTTTTGTTGATAATTTAAGGGTACTATCGCCCAAGATTTTGCCAACGAGGGAGTTGCTCAGGTTTATGGTTGTGGCCCTCACTAAAAAGCTTAACAAAACGAGTTCCTCCATGTCTGGTGGTGGCTTAACCAAATCCCCATTGAACTTCAGGACAGGGGTTGATCATTTCTGCCTACATACAGGAGGAAGGGCTGTGATTGAAGGCGTTGGAAAGAGCTTGGATCTTAGTGAATATGATCTTGAGCCAGCCAGGATGACACTGCACCGTTTTGGGAACACATCAGCCAGCAGCCTGTGGTACGTGATGGCTTATATGGAGGCCAAGAAGAGGCTCAAGAAGGGTGACAGAATATTGATGATAAGTTTTGGCGCTGGGTTTAAATGCAACAGCTGTTTGTGGGAGGTAATGAGGGATCTGGGGGATGCAAATGTGTGGGACGACTGCATTCATGACTACCCACCAGAGTCCTTGGCCAACCCTTTCTTGGAGAAGTATGGTTGGATCCATAAAGTTGAGGAACCCAAAGATTTTCATTTGCCAGATTTTCTCAACTAG 1404 0.4573 MEFLTLLYVVPVLYLCFLMWKVFDERRDQECYVLDYQCHKPTDDRKLGTEFCGKIIARNQHLGLDEYKFILKAIVSSGIGEQTYAPRNFFFGREANPTLTDVISEMEEFFCDSIAKLLARSAISPSEIDVLVVNVSMFAAVPSLSARIINQYKMREDIKAYNLTGMGCSASLISLDFIKSIFKSQKNKYALLVTSESLSPNWYSGNDRSMILTNCLFRSGGCVILLTNKRSLKHKAMLKLKCLVRTHHGAQDEAYGCCLQKEDDQGRLGFHLGKSLPKAATRAFVDNLRVLSPKILPTRELLRFMVVALTKKLNKTSSSMSGGGLTKSPLNFRTGVDHFCLHTGGRAVIEGVGKSLDLSEYDLEPARMTLHRFGNTSASSLWYVMAYMEAKKRLKKGDRILMISFGAGFKCNSCLWEVMRDLGDANVWDDCIHDYPPESLANPFLEKYGWIHKVEEPKDFHLPDFLN 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1786 467 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 450 IPR012392 GO:0006633|GO:0016020|GO:0016747
Glsi14g1786 467 Gene3D - 70 418 IPR016039 GO:0016746
Glsi14g1786 467 PANTHER 3-KETOACYL-COA SYNTHASE 13 437 IPR012392 GO:0006633|GO:0016020|GO:0016747
Glsi14g1786 467 SUPERFAMILY Thiolase-like 243 419 IPR016039 GO:0016746
Glsi14g1786 467 SUPERFAMILY Thiolase-like 18 231 IPR016039 GO:0016746
Glsi14g1786 467 Pfam FAE1/Type III polyketide synthase-like protein 25 313 IPR013601 GO:0006633|GO:0016020|GO:0016747
Glsi14g1786 467 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 336 417 IPR013747 -
Glsi14g1786 467 CDD CHS_like 12 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1786 Glsi-ChrGlsi14 18141694 18143097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1786 19 464 Acyl Lipid Metabolism Gene Families AT2G28630 68.202 0.0 674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1786 14 18141694 18143097 Glsi04g0258 04 1638128 1640227 CCT
Glsi14g1786 14 18141694 18143097 Glsi14g1786 14 18141694 18143097 ECH