Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0258 ATGGATTTCCTCACTTTACTGTATATTGTTCTAGCGTCGTACTTCTGTTTCCTGATCTGGAAGTTCTTTGATCAGAGAAGGGACCAGGAGTGCTTCATATTAGACTACCAATGCCATAAGCCAAGCGATGATAGAAAGCTTGGCACTGAGTTTTGTGGTAAGGTCATCAAAAGGACCGAAAACTTGGGTCTCGGTGAGTACAAGTTCCTTCTCAAAGCCATTGTGAGCTCCGGCATCGGAGAGCAAACTTATGCCCCACGAAACGTCTTCTCCGGCAACGAGGCCAACCCCACCTTGATGGACGGAATCTCGGAGATGGAGGATTTCTTCCATGACAGCATCGAAAAGCTCTTGGCCAGGTCAGCCATTTCTCCCTCTGAGATAGACATTCTCGTGGTTAACATCTCAATGCTTACTACTCTTCCGTCCTTGTCTTCTCGAATCATTAATCATTACAAAATGAGAGAGGACATTAAGGTCTACAACCTCACTGGGATGGGATGCAGCGCTAGCCTTATTTCTTTAGACATTATTAAGAATATCTTCAAGATCCAGAAGAACAAGTACGCTCTTTTGGTCACTTCGGAGTCTCTGAGTCCAAATTGGTATTCTGGGAACGACAAATCAATGGTTCTTGCCAATTGTTTGTTCCGGTCTGGTGGGTGTGCCATTCTTTTGACCAACAAAAGGTCCTTGAAGCACAGAGTCATGTTGAAGTTGAAGTGCTTGGTCAGGACCCATCATGGGGCTAGAGAAGAGGCCTATAATTGTTGCGTTCAAAAGGAAGATGACCAAGGGAGGCGAGGGTTTCACCTTGGGAAAACTCTCCCAAAGGTGGCCACGAGGGCTTTTGTCGATAATTTAAGGGTAATATCCCCCAAGATATTGCCAATGAGGGAATTGCTCAAGTTTATGATTGTGTTCCTCATTAAAAAGTTGAGCAAGACTAGTCCCCCTAAGTCTGCAGGTGGGGGAAACAAATCCCCATTGAATTTTAAAACAGGGGTTAATCATTTTTGCCTACACACGGGAGGAAAGGCTGTGATTGATGGCATTGGAATGAGCTTGGATCTTAGTGAATATGATCTCGAGCCAGCGAGGATGACACTACACCGTTTTGGGAACACATCAGCTAGTAGCCTCTGGTATGTGCTAGGGTACATGGAGGCTAAGAAGAGGCTGAAGAAGGGTGACACAGTGTTGATGATAAGTTTTGGTGCTGGCTTTAAATGTAACAGCTGTTTGTGGGAGGTAGTGAGGGATGTGGGGGATAGAAATGTGTGGGACGATTGCATTGATGACTACCCACCAGAGAGCTTGTCCAACCCTTTCATGGAGAAGTATAGTTGGATCAACAACCTCGAGGTTGAGGACCTACCCAACGTGCAACTTCCAGATTTTCTTAAGTAG 1410 0.4546 MDFLTLLYIVLASYFCFLIWKFFDQRRDQECFILDYQCHKPSDDRKLGTEFCGKVIKRTENLGLGEYKFLLKAIVSSGIGEQTYAPRNVFSGNEANPTLMDGISEMEDFFHDSIEKLLARSAISPSEIDILVVNISMLTTLPSLSSRIINHYKMREDIKVYNLTGMGCSASLISLDIIKNIFKIQKNKYALLVTSESLSPNWYSGNDKSMVLANCLFRSGGCAILLTNKRSLKHRVMLKLKCLVRTHHGAREEAYNCCVQKEDDQGRRGFHLGKTLPKVATRAFVDNLRVISPKILPMRELLKFMIVFLIKKLSKTSPPKSAGGGNKSPLNFKTGVNHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLKKGDTVLMISFGAGFKCNSCLWEVVRDVGDRNVWDDCIDDYPPESLSNPFMEKYSWINNLEVEDLPNVQLPDFLK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0258 469 SUPERFAMILY Thiolase-like 18 231 IPR016039 GO:0016746
Glsi04g0258 469 PANTHER 3-KETOACYL-COA SYNTHASE 14 437 IPR012392 GO:0006633|GO:0016020|GO:0016747
Glsi04g0258 469 SUPERFAMILY Thiolase-like 243 420 IPR016039 GO:0016746
Glsi04g0258 469 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 450 IPR012392 GO:0006633|GO:0016020|GO:0016747
Glsi04g0258 469 Gene3D - 72 418 IPR016039 GO:0016746
Glsi04g0258 469 Pfam FAE1/Type III polyketide synthase-like protein 25 313 IPR013601 GO:0006633|GO:0016020|GO:0016747
Glsi04g0258 469 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 336 417 IPR013747 -
Glsi04g0258 469 CDD CHS_like 19 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0258 Glsi-ChrGlsi04 1638128 1640227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0258 19 466 Acyl Lipid Metabolism Gene Families AT2G28630 69.935 0.0 670
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1786 14 18141694 18143097 Glsi04g0258 04 1638128 1640227 CCT