Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1759 ATGCGGGTAGCGGAGAGAGCCCAAATGCTGGAAGCCCTGTTCTGGAGCTCGACAAAACGGAACGGAGAGAATCAAGAGAAAGAGGGCTTATAGGCAATCATGAGTGACGAAGGAGAAAGGACTTGTCCTCTGTGTGCTGAAGAGATGGATTTGACTGATCAGCAGTTGAAGCCATGCAAATGTGGTTATGAGATATGTGTTTGGTGTTGGCATCACATATTGGAAATGGCTGAGAAGGATGACACAGAGGGGCGATGCCCTGCATGTCGTGTGCCTTATGACAAGAACAAGATTGTAGGGATGGCTGCAAACTGTGAGAGACTGGTGGCTGAAAGCAATATGGAGAGAAAGACGAAGAATCAAAAAGCAAAATCTAGATTATCCGAAGGACGGAAGCAGCTCAGCAGTGTGCGAGTGATTCAGCGAAACCTTGTATATATAGTAGGGTTGCCTCTTAATCTGGCAGATGAAGATCTTCTCCAGAGGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTATCAATGTCACGAACAGCAGCCGGTGTTATTCAACAGTTTCCAAACAATACATGTAGTGTATATATAACTTATTCAAAGGAAGAGGAAGCAATTCGTTGTATTCAAAGTGTACATGGATTTGTCTTGGAGGGTAGACCTTTAAGGGCATGTTTTGGAACCACGAAATATTGTCATGCATGGCTCCGAAATGTGCCTTGCAGCAATCCTGATTGTCTATATCTGCATGAGATTGGCTCTCAAGAAGATAGTTTCACAAAAGATGAAATTATTTCAGCGTACACTAGAAGTCGAGTTCAACAAATTACTGGTGCTGCAAACAATGTGCAACGGCATTCAGGGAATGTATTGCCACCTCCAGTAGATGATTACATGAATAATTCTTCAGGAAAGCCCATTGCAAAAAATGCTTCAAGTACCTCTGCTAGCATCATAAGAGGTTTGCCTCCTAATGGAAGTTCAGAAAGATCTATAGCACTTCCTGCTGCTACTGCATGGGGTACACAGACTACAAGTTGTCAGCCCCCTGCTGGAGGTCTATTATGTCCAAATGGACCATCCAAGCTGAAACATGATGCAGTCAGTAGCACCCTGGCCTTTTCTTCAGCTGTTGTAGGCACAATTCAGGCTTCTGGATTGCATGGTGATGTGATAAAGAGGCTACCATCAAGTGAAGGGAGTCATAGTATGCCACCTGGGGTAAAAAATGAATTATTGAATCCAGCTAAACATTACAATAGCGTGGACAGTCTGAGTAATGCAGGCGAAAAAACTGCAACTTCCTATGTTTCTCCTGCACCTGTGAATTTGAGCAGCCAGTTATCTACTCTACCACTATCTAGAGACAGTGATATAGGCAGTTGTACTACAGCAAACAGAACAAATTCTACTGACGTCACCAGGCAGTCATCATACAGTTCTGGTCCTGAGGAAGCAAGTATTGCTACCAATGAAGAGATTCAGAACTCGTGCTCTGATTTTTCCTCAACTAACATTGATAGAGATGTCCAAAATGAACTTTATGGTATAACCAAACCTAGTAGTCCACCTTCTGATTGTGTGGTGATTAAATCTCCTCAAATTCAAGGATCACAGAATAATCTGGAGAAATTTAGAGATGCATTAATCACAACTGCAGCTGGTAAAGCTGCTACCTTAGATAATCGGGTGTGTATTTCAAGAGAACAGTGTGATTGGAGATTGGATTCACAAGCTCATTTAGTATCAGTATCAGTATCAGCGACAGCTGAAGTGGAAGATGATATAACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTTGTCGTTCTCCTTACTTGCCAAAATCAGCAAGTTTCCTTCATGTGTCTAACCATTCTAGTCCTTCTCTTCTGCAGCATGGTGAATGTTGCGCATCTGTAAATGCTGGTTCTCTTTCTGCAGATGATAAAGTTGGGGATGATTCTCTATTACATGCATCTAGCATATTATGTAATGGTTACCCTGAGAAATTGGCCAGCGGCAGTTCTTATGGTTTGAATAGCACCATTGAACGTTCTTTATTGCTTCATGATGAAAGAAACAAGCAACGGATTGGAAGGTTTTCTGGTGATGCAGTTAATGGTGTAAATGATGCTGCTATTGAAAAGGGTGAAAGTAGTATAATTTCAAATATATTGTCCATGGACTTTGATCCTTGGGGTGACTCTCTAACATCACCTCAGAATTTGGCTAAATTGTGTGAAAATACTGATAACCAGTCTGGTCCAATTAAAAAATCTAGTTCTTGGAAAGTGCAAAATAACAATCAATCAAGATTCTCTTTTGCAAGGCAGGAGGAATCCCAAATCCAAACATTTGATGTACATCCATCTTATGGTGTTGGTGAGCAACTGACGAAGAGCCGTTCACTCATCCAGGATTTTGCAGAAAGAGACTTGTATCTAAATAAGTTGGGTATTGCTAATGGGTTCCCTACCAGTAACTTTGAAGAATCCGAAAATTTAGGCAGTGGCAACTTTGTTGCTTCCTCTAATAAGCCATCTGCTGTTGCAAGAGCTCAGATTACAGTTCCACCAGGATTTTCAATCAGGGCACCACCACCAGGTTTTTCTTCTCAAGAGAGAGTGGAGCAGGCTTTTGACTCCATATCTGGCAGTTCTTTTGACTCTTCGTCCTTAAGGAGAAACTCATATCAGATGCCTACAACTGGAAATATTGGTGGCGCAGGTGACATTGAATTTATTGATCCTGCTATATTGGCAGTTGGTAAGGGGAGACTTCAAGGGACACTAAACAGCCCTGGGTTGGACATGAGATCAAATTTCGCCCCACAATTAAATTATTTTGAAAATGAGGCCAGACTTCAATTATTGATGAATCGATCTCTCTCACCACAGCAGAACCTTAGATTTTCTGATTTGGGGAATACTTTTTCTCAGCGTAGTGGTTCTTATGGAATCTCTTCAAGGTTAGATCAATCACAAGTCAGTAATTTGGTCCCTTTTTCTCAGTTGTCTCCACAGCAGTCCAGAAATGCAGTCTTGTCAAATGGACAATGGGATGGGTGGAATGAAGTGCAGAGTGGAAATGGTCTGGGTGTGGCTGAGCTTCTGAGAAATGAAAGACTTGGACTCAACAAGTTTTATGCAGGATATGAGGATTCAAAATATCGGATGCAGAATTCTGGGGATCTTTACAACAGAACATTTGGGATGTGA 3225 0.4167 MRVAERAQMLEALFWSSTKRNGENQEKEGLXAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILEMAEKDDTEGRCPACRVPYDKNKIVGMAANCERLVAESNMERKTKNQKAKSRLSEGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQSVHGFVLEGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGAANNVQRHSGNVLPPPVDDYMNNSSGKPIAKNASSTSASIIRGLPPNGSSERSIALPAATAWGTQTTSCQPPAGGLLCPNGPSKLKHDAVSSTLAFSSAVVGTIQASGLHGDVIKRLPSSEGSHSMPPGVKNELLNPAKHYNSVDSLSNAGEKTATSYVSPAPVNLSSQLSTLPLSRDSDIGSCTTANRTNSTDVTRQSSYSSGPEEASIATNEEIQNSCSDFSSTNIDRDVQNELYGITKPSSPPSDCVVIKSPQIQGSQNNLEKFRDALITTAAGKAATLDNRVCISREQCDWRLDSQAHLVSVSVSATAEVEDDITSFDNQRLKDPEVCRSPYLPKSASFLHVSNHSSPSLLQHGECCASVNAGSLSADDKVGDDSLLHASSILCNGYPEKLASGSSYGLNSTIERSLLLHDERNKQRIGRFSGDAVNGVNDAAIEKGESSIISNILSMDFDPWGDSLTSPQNLAKLCENTDNQSGPIKKSSSWKVQNNNQSRFSFARQEESQIQTFDVHPSYGVGEQLTKSRSLIQDFAERDLYLNKLGIANGFPTSNFEESENLGSGNFVASSNKPSAVARAQITVPPGFSIRAPPPGFSSQERVEQAFDSISGSSFDSSSLRRNSYQMPTTGNIGGAGDIEFIDPAILAVGKGRLQGTLNSPGLDMRSNFAPQLNYFENEARLQLLMNRSLSPQQNLRFSDLGNTFSQRSGSYGISSRLDQSQVSNLVPFSQLSPQQSRNAVLSNGQWDGWNEVQSGNGLGVAELLRNERLGLNKFYAGYEDSKYRMQNSGDLYNRTFGM 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1759 1074 CDD mRING-HC-C4C4_CNOT4 41 90 IPR039515 -
Glsi14g1759 1074 CDD RRM_CNOT4 138 237 IPR034261 -
Glsi14g1759 1074 ProSiteProfiles Zinc finger RING-type profile. 42 90 IPR001841 -
Glsi14g1759 1074 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 34 110 - -
Glsi14g1759 1074 Gene3D - 144 225 IPR012677 -
Glsi14g1759 1074 MobiDBLite consensus disorder prediction 284 309 - -
Glsi14g1759 1074 MobiDBLite consensus disorder prediction 393 413 - -
Glsi14g1759 1074 SUPERFAMILY RNA-binding domain, RBD 137 223 IPR035979 GO:0003676
Glsi14g1759 1074 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 144 225 - -
Glsi14g1759 1074 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 223 IPR000504 GO:0003723
Glsi14g1759 1074 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 34 1068 IPR039780 GO:0004842|GO:0030014
Glsi14g1759 1074 Pfam RING/Ubox like zinc-binding domain 42 94 - -
Glsi14g1759 1074 SMART rrm1_1 144 225 IPR000504 GO:0003723
Glsi14g1759 1074 SMART rrm2_1 144 225 IPR003954 GO:0003676
Glsi14g1759 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 110 IPR013083 -
Glsi14g1759 1074 SUPERFAMILY RING/U-box 34 100 - -
Glsi14g1759 1074 MobiDBLite consensus disorder prediction 455 489 - -
Glsi14g1759 1074 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 229 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1759 Glsi-ChrGlsi14 17977984 17986375 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1759 14 17977984 17986375 Glsi04g0285 04 1851700 1858291 CCT
Glsi14g1759 14 17977984 17986375 Glsi14g1759 14 17977984 17986375 ECH