Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0285 ATGAGTGACGAAGGAGAAAGGACTTGTCCACTCTGTGCAGAAGAGATGGATTTGACTGATCAGCAGTTGAAGCCTTGCAAATGTGGTTATGAGATATGTGTTTGGTGTTGGCATCACATTATGGACATGGCTGAGAAGGATGATACGGAGGGGCGATGCCCTGCATGTCGATCTCCATATGACAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAATTAATATTGAGAGAAAGATGAAGAACCAGAAAGCAAAGTCTAAATCTTCTGAAGGGCGGAAGCAACTCAGCAGTGTGCGAGTGATTCAGCGAAATCTTGTCTACATAGTTGGGTTGCCTCTTAATCTGGCAGATGAAGATATCCTCCAGCAGCGAGAGTATTTTAGTCAGTATGGGAAGGTCTTAAAAGTTTCAATGTCGCGGACAGCAGCTGGTGTCATTCAGCAGTTTCCAAACAATACATGTAGTGTATATATTACTTACTCAAAGGAAGAAGAAGCAATTCGGTGTATTCAAAATGTACATGGGTTTGTCTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTTCGAAACATGCCTTGCAGCAATCCAGATTGTTTATATCTGCATGATATTGGTTCTCAAGAAGATAGTTTTACGAAAGATGAAATAATATCAGCATACACAAGAGTTCAACAAATTACTGGTGCTACAAATAATATGCAACGGCGCTCAGGGAATGTGTTACCACCTCCAATGGATGATTACATTAATAATTCCTCAGGAAAAGTCATTGTGAAAAATGCTTTGAGTAATTCTGCTAGCATTCTTAAAGGTTCGCCTCCTAATGGAAGTTCTGGAAGATCAACAATTCAACCTGCTGCTGCATGGGGTACACGAGCTACAAATTGTCAGCCCCCTGCTGGTGGTTTATTATGCCCTAATGGATCAGCTAAGTTGAAACCTGATACTGTTAGTGGCACACTAGCCTTTTCTTCAGCTGTTGCCAGCACCAGTCAGAATTCTTCATTGCATAGTGGGGCGACAAAGAGACCACTGTCAAGTGATGGAAGTCATAATAACCCTAGAGTTCAAAATGAATTGTTGAAACCCATGAAACTTTATAATAGCATGGACAACCTGAGTAATGCAGGTGAAAAAACTGCTACTTCTGATGGTTGTCCTGCACTTGTGAATTTGAACAGCCAGTTGTCTGCTCTATCATTATCCAGAGACGGTGAAAGAGGCAGTTGTACTACAGCAAACATAACAAATTCTCCTGACATCACTGGGCAGCTGTGCAGCTCTGGTCCTGAGGAAGCAACTATTGCTACCAATGAAGAGATTCAGAACTTGTGCTCCGATTTGTCCTCTGTTAATATTGATAGAAATGGCCAAAATGAATACTATGGTATAGCCAGACCTATTAGTCCTCCATCTGATCGTATCTTGACTAAATCTTCTCCAATTCAAGGATCGCAACAGCATAGTACTGACAAATTTAGAGATGCACTGATTACAAGTGCTGTTGGCAAAGCTGCTCCATCAGATAATGAGGTGTGTATTCCAAGGGAGCAGTCTGATTGGAGATTGGATTCACAAGCTCAAATAGTATCAGCTACTACTGAAGTGGAAGATGATATAGTTTCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTGTTTGTCATTCTCCTTACTTGCCAAAGTCAACGAGTTTCCTACATGTCCCAAACAATTCTGGTCATGGTCTTATACAGGATGGTGAACCTTGCCCTTCTGTAGTTGCTGATTTTGTATCTGCAGATCATAAAGTTGGGGAGGATACTCTATTAAATGCTTCTAACGTATTATGTAGTGGTTACCCTGAGAAGTTGGTCAGCAGCCGTGCTTGTGGTTTGAATAGCACCACTGAACGTTCTTTCTTTCTTCAAGATGAAAGAAACGAGCTATGCAGTGGAAGATTATTTAGCGATGCTGGAAGTGATGCTGCACTGGATAAGGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGACTTTGATCCATGGGATGACTCACTAACATCACCTCAGAATTTGGCTAAGTTGTTGAGTGACAACACTGATAACCAATCCGGTCCATTAATAAAATCTAGTTCGTTGAAAGTGCAAAATAACAGTCAATCAAGATTCTCTTTTGCAAGGCAGGAGGAACCCAAATTCCAAACATTTCATTCACATTCATCATATGGTATCAACGAGCAATTGCCAAAGAGGGGCTCTTTCATCCAGGGATTTGCAGAAAGAGACTTGTATATGGATAAGAAGTTGGGTATTGCAAATGGCTTCCCTTCCAATAAACTTGAGGAATCTGAAAATCTAGGCATTGGTCACTTTGTTGCTTCTAATAAACTTTCTGCTGTTTCAAGAGCTCAAATTTCAGCTCCGCCAGGATTTTCAGTTCCAAGCAGGCCTCCACCACCAGGTTTTTCTTCTTACGAGAGAGTGGAGCAGGCTTTTGATTCAATACCTGGAGACATTGAATTTATGGATCCTGCTATTTTGGCAGTTGGTAGGGGGAGAATTCAAGGTGCAGTGAACAGCCCAGGGTTAGATATGAGATCAAATTTTTCCCCACCATTAAATTACTTTGACAATGAGGCCAGACTTCAGTTATTGATGCAACGATCTCTCTCACCACCACAAAACCTTAGATTTTCTGAAATTGGGAATAATTTTTCACAGCTTAGTGATTCTTATGGCATTTCTTCAAGGTTAGATCAATCACAAGTCAGCAATTTGGCTCCTTATGCTCCGATATCCCTACAGCATTCTAGAAATTCAGTCTTGTCTAATGGCCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAGTGGTCTGGGTGTGGCTGAACTTCTGAGAAATGAAAGAGTTGGATTTAACAAATTGTATACAGGATATGATGATTCAAAATATCGGATGCCAAATTCTGGGGATCTTTACAACAGAACGTATGGGATGTGA 3030 0.4109 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVAEINIERKMKNQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEDILQQREYFSQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHDIGSQEDSFTKDEIISAYTRVQQITGATNNMQRRSGNVLPPPMDDYINNSSGKVIVKNALSNSASILKGSPPNGSSGRSTIQPAAAWGTRATNCQPPAGGLLCPNGSAKLKPDTVSGTLAFSSAVASTSQNSSLHSGATKRPLSSDGSHNNPRVQNELLKPMKLYNSMDNLSNAGEKTATSDGCPALVNLNSQLSALSLSRDGERGSCTTANITNSPDITGQLCSSGPEEATIATNEEIQNLCSDLSSVNIDRNGQNEYYGIARPISPPSDRILTKSSPIQGSQQHSTDKFRDALITSAVGKAAPSDNEVCIPREQSDWRLDSQAQIVSATTEVEDDIVSFDNQRLKDPEVVCHSPYLPKSTSFLHVPNNSGHGLIQDGEPCPSVVADFVSADHKVGEDTLLNASNVLCSGYPEKLVSSRACGLNSTTERSFFLQDERNELCSGRLFSDAGSDAALDKGESSIISNILSMDFDPWDDSLTSPQNLAKLLSDNTDNQSGPLIKSSSLKVQNNSQSRFSFARQEEPKFQTFHSHSSYGINEQLPKRGSFIQGFAERDLYMDKKLGIANGFPSNKLEESENLGIGHFVASNKLSAVSRAQISAPPGFSVPSRPPPPGFSSYERVEQAFDSIPGDIEFMDPAILAVGRGRIQGAVNSPGLDMRSNFSPPLNYFDNEARLQLLMQRSLSPPQNLRFSEIGNNFSQLSDSYGISSRLDQSQVSNLAPYAPISLQHSRNSVLSNGQWDGWNEVQSGSGLGVAELLRNERVGFNKLYTGYDDSKYRMPNSGDLYNRTYGM 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0285 1009 Gene3D - 111 192 IPR012677 -
Glsi04g0285 1009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Glsi04g0285 1009 CDD RRM_CNOT4 105 204 IPR034261 -
Glsi04g0285 1009 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Glsi04g0285 1009 MobiDBLite consensus disorder prediction 343 371 - -
Glsi04g0285 1009 SMART rrm1_1 111 192 IPR000504 GO:0003723
Glsi04g0285 1009 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Glsi04g0285 1009 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Glsi04g0285 1009 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 111 192 - -
Glsi04g0285 1009 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Glsi04g0285 1009 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 1 77 - -
Glsi04g0285 1009 SMART rrm2_1 111 192 IPR003954 GO:0003676
Glsi04g0285 1009 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1003 IPR039780 GO:0004842|GO:0030014
Glsi04g0285 1009 CDD mRING-HC-C4C4_CNOT4 8 58 IPR039515 -
Glsi04g0285 1009 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Glsi04g0285 1009 SUPERFAMILY RING/U-box 3 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0285 Glsi-ChrGlsi04 1851700 1858291 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1759 14 17977984 17986375 Glsi04g0285 04 1851700 1858291 CCT