Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1620 ATGGCGGCCACTTTTCCCACTAGGATTATCTTTACCCTCGCGCTGCTATCGGCGGCGGCGGTCGCTTGTGGATTTCCGGCGTCTCTGACTCTGGAAAGAGCATTTCCGACGAATCACGGAGTGGAGTTGAGTCAGCTCAGAGCTTGGGACAGAGTCAGGCATCAAAGAATGTTGCAGTCTTCTAGCGGTGTAGTCGATTTCCCTGTTGCAGGGACCTTCGATCCGTTCCAAGTCGGGCTTTACTATACAAAGGTGCAGTTGGGTTCTCCTCCAAGAGAGTTCCACGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGCTGCGGCTCCTGCAATGGTTGTCCCGAGACAAGTGGACTCCAAATTCAGCTCGATTTTTTTGACCCCGGGAGTTCATCAACATCTTCACTGATCTCTTGTTCAGACCAAAGATGCCGTAGTGGAGTTCAATCATCAGATGCTAGCTGTTCCAATCAGAACAACCGGTGTGCTTACACATTTCAGTATGGAGATGGTAGTGGAACATCAGGCTATTATGTCTCCGACTTGATGCATTTTGACGCCATTTTTGAGGGATCCGTGACTTCAAATTCTTCAGCTCCTGTAGTTTTTGGGTGTAGCACCCAGCAGACTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGGATATTTGGATTTGGGCAACAGGAAATGTCTGTCATCTCCCAGCTATCCTCACAAGGCATAGCGCCAAGAGCGTTCTCCCACTGTCTGAAAGGAGATAGTGCTGGTGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAATATAGTTTATACTCCACTTGTTCCATCACAGCCTCATTACAATTTAAATCTGCAGAGCATCTCTGTCAATGGCCAAATACTATCAATTGATTCAGAAGTTTTTGCAACATCAAGCAACCGAGGTACCATTATTGATTCTGGAACAACTTTGGCATACCTTGCAGAAGGGGCTTATGATCCCTTTGTCAATGCGGTTACAGCTACAATTCCACAATCTGTACGAACTGTTCTTTCCAGGGGAAACCAGTGTTACTTAATCACCACCAGCATCTCTGATTTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGAGCATCTATGGTTTTAAGACCACAAGACTACCTTGTGCAGCAGAATTCTATTGGAGGTGCAGCAGTGTGGTGTATTGGCTTTCAGAAAATCCAGGGTCAGGGGATAACAATTTTAGGAGACCTCGTATTAAAAGACAAAATTTTTGTTTATGATCTAGCTGGTCAACGCGTTGGATGGGCTAACTATGACTGTTCCATGCCTGTTAATGTCTCTGCAACAACTGGCACGGGAAGAAGCGAATTTGTGAATGCAGGAGAGCTAAGTGGAAGCACATGTTTGCGTGAAGGGCCTCACAAGTTGATAAAGGCGGGAATGTTGGCTTTCTTTATGCACCTAACACTGATCTGCTTGTTTGTGTTTTTGTAG 1494 0.4612 MAATFPTRIIFTLALLSAAAVACGFPASLTLERAFPTNHGVELSQLRAWDRVRHQRMLQSSSGVVDFPVAGTFDPFQVGLYYTKVQLGSPPREFHVQIDTGSDVLWVSCGSCNGCPETSGLQIQLDFFDPGSSSTSSLISCSDQRCRSGVQSSDASCSNQNNRCAYTFQYGDGSGTSGYYVSDLMHFDAIFEGSVTSNSSAPVVFGCSTQQTGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRAFSHCLKGDSAGGGILVLGEIVEPNIVYTPLVPSQPHYNLNLQSISVNGQILSIDSEVFATSSNRGTIIDSGTTLAYLAEGAYDPFVNAVTATIPQSVRTVLSRGNQCYLITTSISDFFPQVSLNFAGGASMVLRPQDYLVQQNSIGGAAVWCIGFQKIQGQGITILGDLVLKDKIFVYDLAGQRVGWANYDCSMPVNVSATTGTGRSEFVNAGELSGSTCLREGPHKLIKAGMLAFFMHLTLICLFVFL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1620 497 Gene3D Acid Proteases 268 446 IPR021109 -
Glsi14g1620 497 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Glsi14g1620 497 PRINTS Pepsin (A1) aspartic protease family signature 314 325 IPR001461 GO:0004190|GO:0006508
Glsi14g1620 497 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Glsi14g1620 497 CDD pepsin_A_like_plant 81 440 IPR034161 -
Glsi14g1620 497 Pfam Xylanase inhibitor C-terminal 284 436 IPR032799 -
Glsi14g1620 497 ProSiteProfiles Peptidase family A1 domain profile. 81 436 IPR033121 -
Glsi14g1620 497 FunFam Aspartic proteinase-like protein 2 64 267 - -
Glsi14g1620 497 Pfam Xylanase inhibitor N-terminal 81 266 IPR032861 -
Glsi14g1620 497 PANTHER ASPARTYL PROTEASES 23 434 IPR001461 GO:0004190|GO:0006508
Glsi14g1620 497 Gene3D Acid Proteases 55 267 IPR021109 -
Glsi14g1620 497 FunFam Aspartic proteinase-like protein 2 268 447 - -
Glsi14g1620 497 SUPERFAMILY Acid proteases 76 442 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1620 Glsi-ChrGlsi14 16575630 16580551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1620 55 441 Miscellaneous Gene Families AT1G44130 26.368 9.13e-43 155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1620 14 16575630 16580551 Glsi04g0441 04 2942156 2949273 CCT
Glsi14g1620 14 16575630 16580551 Glsi14g1620 14 16575630 16580551 ECH