Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi14g1345 ATGGATTATATCAAGTTTTCTAGTGTTCAGGGAATCACAATTAATGATTCCTATTGTTATAATACCGTTATTGATGGCTTATCTAAGTGTGGTAGGATTGATGAAGATTCGGCACTTTTAAAGCAGATGGAACATGAAGCCCCCATGGGTTTTGTTCCTGACACTGCTTATGAAGGCATAATTGTTGTGCTGCGCAGAGTAGGGCATGTCAAGGAAGTCTGCAAATTAGGTGATGGAATTGTGGATGAGGGTAGGGAATTACTAGGAAGGATTCATACTTTACTCATTAATGCCTTGAGGAAATCTGATAATGCATATTTGGAAATAAAGTTGATGCATTGTGACACCACTCCTTATTTCACTTGTTATCAGCCAGAAATAGTCAAATGTTTTCATGGTTTTTCTCAGTTAGGGAAAGATGAACCTTATCTTTCAATGATTTACAATCCAGTCCACTCGAAAGTTGATTTGTGTAGCTCATCAGAAGGATGGGCAAATTCTAGACAGAGACCCCGGCCAACAGAATTATTTTTAGTGCACTCCCGGCACCGACCGACTTTAATGGAACCAGTTCTAAGTTATAACAGTAGCAGAAGCAATGGCAATAATCATGATTATGATATCATTAGCTGGTTTGAAGATGTATCGAAGAACGCTGGTTCTGTTCAGACCCAGCTGCTATGCCAGATTCTGAAGCACAACTATGGGGTGGAATATCTCAAGAGATGGTTGAGGGACTACAATATCCTAGAAATGGATGCATGTGCATTGGAATCCCTTTTCACTTCTGTGGTTCCCCTTTCCTCACATGAAGATTTTGAGCCCTTTATCCAAAGGATTGCAGATGGGGAGACAAGTCCTTTACTTACTCAACAACCCATAACCACTCTTTCCTTAAGTTCTGGAACCACAGAGGGAAGGCAAAAGTTTGTACCCTTTACCCGTCATAGCGCGCAAACTACCCTTCAAATATTCACTCTAGCAGCAGCCTATAGATCAAGGGTTTATCCCACCAGAGAAGGAGGTAGGATTCTTGAATTCATATACAGCAGCAAACAGTTCCAAACAAAAGGAGGATTAACAGTAGGAACGGCCACAACACACTACTATGCAAGCGAAGAATTCAAAATCAAACAGGTGAAAACAAAGTCATTCACTTGCAGCCCAGACCAAGTGATTTCAGGTGGAGACTATAAACAATCCACCTACTGTCACCTCCTCCTTGGCCTCTTCTTCTCTGATCAAGTAGAGTTTATCACCTCAGCCTTTGTCTATAGCATAGTGCAAGCGTTTCGCAGTTTTGAAGAGGTTTGGAGAGACATATGCAACGACATTAAAGGTGGTGTTTTGAGTTCAAGAATCAAAGTACCCAAAATGAGAAAGGCCGTTTTGGATCTTATCTCTCCAAACCCAAGTTTGGCTTCAAAATTAGAAGCCACTTGCGAGGAGTTAGAAGAGGTGAATTGGTTTGGCCTGATTCCGAAGCTTTGGCCAAATGTTAAGTACGTGTACTCCATAATGACAGGATCAATGCAGCCGTACTTGAAAAAGTTAAGACATTATGCAAATGGGTTGCCATTAGTGAGTGCTGACTATGGCTCAACTGAGAGCTGGATAGGGGTTAATGTGGATCCTAGTTTGCCTCCGGAGAATGTAACTTTTGCTGTAGTACCCACTTTCTCTTACTTTGAGTTCATACCGCTTCACAGGCAGAAACAAGATTGCAGTTCAGTTGCAGATGATTTTATAGAAGACACGCCAATCCCACTATCCCAGGTTAAGGTTGGACAAGAGTATGAATTAGTGCTTACTACTTTCACCGGACTATACAGATGCAGATTAGGGGACGTAGTGGAAGTGGCTGGTTTTCACAATGGAACCCCAAAATTGACCTTCATATGCAGAAAAAAGCTAATTCTAACAGTGAACGTAGACAAGAACACAGAGAAGGACCTTCAACTAGTGGTAGAGAGAGGGTCACAGCTGCTGAACAGGTCCCAAGCTGAGCTCGTAGACTTTACTAGCTCTGCTAATGTCTCAAACCAACCAGGACACTATGTTATCTACTGGGAAATTAAAGGACAGGTAGAGGAAAAGGTGCTAGACAAGTGTTGTACGGAAATGGACGTATCTTTTGCGGACCATGGCTACGTGGTCTCTAGAAAGACCCATTCAATAGGACCTCTAGAGCTTTGCATCGTGGAGAGAGGAACCTTCAAGAAGATTTTGGATCATTTCCTAGCAAACGGGGCTGCACTTAGCCAGTTCAAGACCCCCAGGTGCACTAACAACCAGGTCCTACTCAAAATCCTTAGCGCATCCACCGTTAAGAGGTTTCGCAGCACTGCTTATAGTTGA 2358 0.4254 MDYIKFSSVQGITINDSYCYNTVIDGLSKCGRIDEDSALLKQMEHEAPMGFVPDTAYEGIIVVLRRVGHVKEVCKLGDGIVDEGRELLGRIHTLLINALRKSDNAYLEIKLMHCDTTPYFTCYQPEIVKCFHGFSQLGKDEPYLSMIYNPVHSKVDLCSSSEGWANSRQRPRPTELFLVHSRHRPTLMEPVLSYNSSRSNGNNHDYDIISWFEDVSKNAGSVQTQLLCQILKHNYGVEYLKRWLRDYNILEMDACALESLFTSVVPLSSHEDFEPFIQRIADGETSPLLTQQPITTLSLSSGTTEGRQKFVPFTRHSAQTTLQIFTLAAAYRSRVYPTREGGRILEFIYSSKQFQTKGGLTVGTATTHYYASEEFKIKQVKTKSFTCSPDQVISGGDYKQSTYCHLLLGLFFSDQVEFITSAFVYSIVQAFRSFEEVWRDICNDIKGGVLSSRIKVPKMRKAVLDLISPNPSLASKLEATCEELEEVNWFGLIPKLWPNVKYVYSIMTGSMQPYLKKLRHYANGLPLVSADYGSTESWIGVNVDPSLPPENVTFAVVPTFSYFEFIPLHRQKQDCSSVADDFIEDTPIPLSQVKVGQEYELVLTTFTGLYRCRLGDVVEVAGFHNGTPKLTFICRKKLILTVNVDKNTEKDLQLVVERGSQLLNRSQAELVDFTSSANVSNQPGHYVIYWEIKGQVEEKVLDKCCTEMDVSFADHGYVVSRKTHSIGPLELCIVERGTFKKILDHFLANGAALSQFKTPRCTNNQVLLKILSASTVKRFRSTAYS 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi14g1345 785 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 208 784 IPR004993 -
Glsi14g1345 785 Gene3D Tetratricopeptide repeat domain 8 112 IPR011990 GO:0005515
Glsi14g1345 785 Pfam GH3 auxin-responsive promoter 211 765 IPR004993 -
Glsi14g1345 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 16 46 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi14g1345 Glsi-ChrGlsi14 14303086 14309914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi14g1345 207 782 EF-hand Containing Proteins AT1G23160 35.593 2.23e-119 370
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1345 14 14303086 14309914 Glsi04g0738 04 5204727 5214151 CCT
Glsi14g1345 14 14303086 14309914 Glsi14g1345 14 14303086 14309914 ECH