Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0610 ATGGAAATGAACAAGTTCTTGTGGGTTGCTCTCTCACTTGCTTTGGTTCTTGGAATGGCCGAGAGCTTTGATTTCCACGACAAGGATTTGGAATCCGAAGAGAGAATGTGGGACTTGTACGAGAGATGGAGGAGCCACCACACTGTCTCTCGAAGCCTCAGTGACAAGCACAAGCGCTTCAATGTGTTCAAAGCCAACGTGATGCACGTCCATCATACCAACCAGATGGACAAGCCTTACAAGCTCAAGTTGAACAAGTTCGCTGACATGACCAATCATGAGTTTAGGACTATCTATGCTGCCTCGAAGGTGAACCACCATAGAATGTTTCGTGGCATGCCACGTGGGAATGGAACCTTCTTGTATGAGAACGTTGGCATCGTTCCCCCTTCTGTTGATTGGAGGAAGAAAGGTGCTGTCACTGGTGTAAAAGATCAAGGCCGATGTGGTAGTTGCTGGGCGTTTTCAACAGTCGTAGCTGTTGAAGGTATTAACCAGATCAGAACAAATAAGCTAGTCTCCTTGTCTGAGCAAGAGTTGGTAGATTGTGACACTTCAGAAAATGAAGGATGCAGTGGTGGGCTAATGGAGTATGCCTTTGAGTTCATCAAGCAAAAGGGTGGTATAACCACAGAAAGCAATTACCCTTATAAAGCACAAGATGGAACCTGCGATGTGTCAAAGGAGAAAGAACCGGCAGTGTCAATCGATGGCCATGAGAAGGTCCCTGCTAACGATGAGGACGCATTGCTCCAGGCTGTTGCCAACCAACCTATATCTGTAGCCATAGATGCTGGAGGATCTGACTTCCAATTTTACTCGGAGGGAGTGTTTACTGGAGATTGTAGCAAGGAGCTAAATCATGGGGTGGCGATTGTGGGCTATGGAACAACTCTTGATGGAACCAAATATTGGATAGTGAAGAACTCATGGGGATCCGAATGGGGAGAGCAGGGTTACATCAGGATGGAGAGGGGTATATCTGACAAGGAGGGACTCTGCGGCATAGCAATGGAGGCTTCTTATCCTATCAAAAACTCCTCCACTAACCCAACAGGACATTCTTCATCTCCTAAAGACGAGCTTTGA 1089 0.4683 MEMNKFLWVALSLALVLGMAESFDFHDKDLESEERMWDLYERWRSHHTVSRSLSDKHKRFNVFKANVMHVHHTNQMDKPYKLKLNKFADMTNHEFRTIYAASKVNHHRMFRGMPRGNGTFLYENVGIVPPSVDWRKKGAVTGVKDQGRCGSCWAFSTVVAVEGINQIRTNKLVSLSEQELVDCDTSENEGCSGGLMEYAFEFIKQKGGITTESNYPYKAQDGTCDVSKEKEPAVSIDGHEKVPANDEDALLQAVANQPISVAIDAGGSDFQFYSEGVFTGDCSKELNHGVAIVGYGTTLDGTKYWIVKNSWGSEWGEQGYIRMERGISDKEGLCGIAMEASYPIKNSSTNPTGHSSSPKDEL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0610 362 SMART Inhibitor_I29_2 40 95 IPR013201 -
Glsi02g0610 362 MobiDBLite consensus disorder prediction 343 362 - -
Glsi02g0610 362 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 31 342 IPR013128 GO:0008234
Glsi02g0610 362 Pfam Papain family cysteine protease 128 344 IPR000668 GO:0006508|GO:0008234
Glsi02g0610 362 SUPERFAMILY Cysteine proteinases 33 344 IPR038765 -
Glsi02g0610 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Glsi02g0610 362 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Glsi02g0610 362 FunFam Senescence-specific cysteine protease SAG39 20 345 - -
Glsi02g0610 362 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Glsi02g0610 362 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Glsi02g0610 362 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Glsi02g0610 362 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Glsi02g0610 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Glsi02g0610 362 CDD Peptidase_C1A 129 343 IPR039417 -
Glsi02g0610 362 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Glsi02g0610 362 Gene3D Cysteine proteinases 14 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0610 Glsi-ChrGlsi02 3998799 4000400 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0610 02 3998799 4000400 Glsi13g1367 13 30887465 30888907 CCT
Glsi02g0610 02 3998799 4000400 Glsi02g0610 02 3998799 4000400 ECH