Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1321 ATGGATAAATATGAAAAGAGATCAAATTGGGGACAAAAGAGAGACGTGAGTGGCACGGTGTGCACGCAGCAAAAGCATCTCTGTCTCTCATCTGTCAAGCATATGAACACCGTTCATGCTGTTTTACTAAACATGAACGGCATTTTTAGTCAGTATCTCGATAGTTCTGGTAAGCTATCTAGTTTTCCAGTCCCACTGCGCAAATGCTCTTCGTCCTTCAAAGATTCTAAAGCAGGCAAAGTACCCATGAAGGCCACAGTAAGGTACCTAGCAGGAATAGCAGGCCCTAGTGGTTTTGGCTCAAATTCTACAGCTGAGCAAGTTACTGAACATTATTCTTGCAAGCTTCCTTCCCATCTAACCGCTGTGATTACTGGGGCGACTTCTGGTATTGGAGCCGAAACGGCTAGAGTTTTGGCAAAGAGAGGAGTGAGGGTTGTGATTGCTGCGAGGAACTTGAAGAAGGCAAGGGAAGTGAGAGAGAATATCCTGAAAGAGAGTCCAAATGCTGAGATTATATTGCTGGAGATTGATCTGAGCTCTTTCGCTTCTGTACAGAGATTTTATTCTGAGTTTTTAGCTCTACAAATTCCCCTTAATATTCTCATAAACAATGCTGGGATATTCTCTCAGAACTTGGAGTTCTCTGAAGAGAAAATTGAGATGACATTTGCAACAAATTACTTGGGGCATTTTCTCTTAACAGAAATGCTATTAGAGAAAATGATAGAAACGGCAGAGAAGACGGGTATTCAAGGAAGAATAATAAACGTCTCTTCAGCGATCCATAGTTGGGTGAAAAGAGATGGTTTTCGATTCAAGGACATGCTCAACGGAAGAAACTATAATGGCACACGTGCGTATGCTCAGTCAAAATTGGCTACTATTTTGCATGCGAAGGAAATGGCCAAACAGCTAAAGGCAATAAATGCAAGAGTAACTATCAATGTACTCCATCCGGGCATTGTGAAGACTGGAATTATGAGAGCACACAAGAGTTTAATAACAGATTCCTTGTTTTTCATTGCGTCCAAGTTACTCAAATCCATGTCTCAGGGTGCATCAACGACATGTTATGTTGCTCTGAGCCCAGAAATAGAAGGGGTGAGTGGGAAATACTTTACAGATTGTAACGAGAGTAACTGCTCAAGTTTAGCAAATGACGAAGCCGAAGCTGAAAAGCTATGGAACGATACACGTACCCTGCTTCACAAACGATTACGTCAACCAGCAATTTAA 1239 0.4181 MDKYEKRSNWGQKRDVSGTVCTQQKHLCLSSVKHMNTVHAVLLNMNGIFSQYLDSSGKLSSFPVPLRKCSSSFKDSKAGKVPMKATVRYLAGIAGPSGFGSNSTAEQVTEHYSCKLPSHLTAVITGATSGIGAETARVLAKRGVRVVIAARNLKKAREVRENILKESPNAEIILLEIDLSSFASVQRFYSEFLALQIPLNILINNAGIFSQNLEFSEEKIEMTFATNYLGHFLLTEMLLEKMIETAEKTGIQGRIINVSSAIHSWVKRDGFRFKDMLNGRNYNGTRAYAQSKLATILHAKEMAKQLKAINARVTINVLHPGIVKTGIMRAHKSLITDSLFFIASKLLKSMSQGASTTCYVALSPEIEGVSGKYFTDCNESNCSSLANDEAEAEKLWNDTRTLLHKRLRQPAI 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1321 412 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 208 IPR002347 -
Glsi13g1321 412 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 288 307 IPR002347 -
Glsi13g1321 412 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 253 261 IPR002347 -
Glsi13g1321 412 Gene3D - 110 408 - -
Glsi13g1321 412 PANTHER RETINOL DEHYDROGENASE 96 401 - -
Glsi13g1321 412 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 121 380 IPR036291 -
Glsi13g1321 412 PRINTS Glucose/ribitol dehydrogenase family signature 247 263 IPR002347 -
Glsi13g1321 412 PRINTS Glucose/ribitol dehydrogenase family signature 311 328 IPR002347 -
Glsi13g1321 412 PRINTS Glucose/ribitol dehydrogenase family signature 121 138 IPR002347 -
Glsi13g1321 412 PRINTS Glucose/ribitol dehydrogenase family signature 197 208 IPR002347 -
Glsi13g1321 412 PRINTS Glucose/ribitol dehydrogenase family signature 288 307 IPR002347 -
Glsi13g1321 412 CDD retinol-DH_like_SDR_c_like 121 396 - -
Glsi13g1321 412 Pfam short chain dehydrogenase 121 261 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1321 Glsi-ChrGlsi13 30565826 30570056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1321 101 330 Acyl Lipid Metabolism Gene Families AT1G63380 29.707 2.90e-15 73.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0669 02 4355502 4359205 Glsi13g1321 13 30565826 30570056 CCT
Glsi13g1321 13 30565826 30570056 Glsi13g1321 13 30565826 30570056 ECH