Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0669 ATGACAAAGAGGTCTGCCTTATGTGTTATGTTTGAGTATATATATTGCTATATGGTTTTAACTTTCAACCCACAAATGCTCTTTGTCCTCCTAAGAAAGTCTAAAGCAGAAGCAGGCAAACCCATGAAGGCAACACTAAGGTACTTAGCAGGAATCGCAGGCCCTAGCGGTTTTGGCTCAAATTCAACCGCTGAGCAAGTTACCGAAGATTGCTCTTCCTTCCTCCCTTTCCATCTAACGGCTCTGATAACTGGTGGGACTTCTGGGATTGGAGCTGAAACAGCGAGAGTGTTAGCAAAGAGAGGAGTGAGAATTGTGATTGCCGCGAGGGACTTGAAGAAGGCAAACGAAGTGAGACAGAATATCCAGAAAGAGACTCCAGAGGCTGAGGTTATATTGTTGGAGATTGATCTAAGCTCTTTTGCTTCCGTGCAGAGATTTTGTTCAGAGTTTTTAGCTCTAGAACTGCCCCTTAATATCCTCATAAACAATGCTGGAATATACTCCCAGAACTTGGAGTTCTCCGAAGAGAAAATTGAAATGACATTTGCTACAAATTACTTGGGACATTTTCTGTTGACAGAAATGCTTTTAGAAAGAATGATAGAAACGGCAGAGAAGACAGGTACTCAAGGAAGAATAATCAGCGTTTCTTCTGTGATCCACAGCTGGGTCAAAAGAGATGGCTTTCGTTTCCACGACATGCTCAACGGAAGGAGTTATAATGGCACACGCGCATATTCTCAATCAAAATTAGCCAATATTTTGCATGCGAAGGAATTGGCCAGACAGTTAAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTCCATCCAGGCATAGTGAAGACAGGAATTATCAGAGCTCATAAAGGCTTAATAACAGATTCCCTGTTTTTCATTGCATCCAAGTTACTCAAATCAACATCTCAGGGTGCATCAACTACGTGTTATGTTGCTCTAAGCCCACAAACAGAGGGGTTGAGTGGGAAATACTTCACAGATTGTAATGAGAGTAATTGCTCAAATTTAGCAAATGACGAACTTGAAGCTCAAGAGCTATGGAACAACACCCGAGCCTTACTTCAAAAACGACTACGTCAAGCAGCAATTTGA 1116 0.4194 MTKRSALCVMFEYIYCYMVLTFNPQMLFVLLRKSKAEAGKPMKATLRYLAGIAGPSGFGSNSTAEQVTEDCSSFLPFHLTALITGGTSGIGAETARVLAKRGVRIVIAARDLKKANEVRQNIQKETPEAEVILLEIDLSSFASVQRFCSEFLALELPLNILINNAGIYSQNLEFSEEKIEMTFATNYLGHFLLTEMLLERMIETAEKTGTQGRIISVSSVIHSWVKRDGFRFHDMLNGRSYNGTRAYSQSKLANILHAKELARQLKARNARVTINAVHPGIVKTGIIRAHKGLITDSLFFIASKLLKSTSQGASTTCYVALSPQTEGLSGKYFTDCNESNCSNLANDELEAQELWNNTRALLQKRLRQAAI 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0669 371 Coils Coil 105 125 - -
Glsi02g0669 371 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 247 266 IPR002347 -
Glsi02g0669 371 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 167 IPR002347 -
Glsi02g0669 371 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 220 IPR002347 -
Glsi02g0669 371 Pfam short chain dehydrogenase 80 221 IPR002347 -
Glsi02g0669 371 CDD retinol-DH_like_SDR_c_like 80 355 - -
Glsi02g0669 371 PANTHER RETINOL DEHYDROGENASE 55 361 - -
Glsi02g0669 371 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 80 339 IPR036291 -
Glsi02g0669 371 Gene3D - 78 367 - -
Glsi02g0669 371 PRINTS Glucose/ribitol dehydrogenase family signature 247 266 IPR002347 -
Glsi02g0669 371 PRINTS Glucose/ribitol dehydrogenase family signature 80 97 IPR002347 -
Glsi02g0669 371 PRINTS Glucose/ribitol dehydrogenase family signature 270 287 IPR002347 -
Glsi02g0669 371 PRINTS Glucose/ribitol dehydrogenase family signature 156 167 IPR002347 -
Glsi02g0669 371 PRINTS Glucose/ribitol dehydrogenase family signature 206 222 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0669 Glsi-ChrGlsi02 4355502 4359205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0669 60 289 Acyl Lipid Metabolism Gene Families AT1G63380 28.571 1.63e-14 71.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0669 02 4355502 4359205 Glsi13g1321 13 30565826 30570056 CCT
Glsi02g0669 02 4355502 4359205 Glsi02g0669 02 4355502 4359205 ECH