Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1301 ATGCAATCTTTAAGTGCTAAGGCGGCTCTCATGGAATTGCGGGTACCGGGTCCGGGAGGCTCCGGTTTCGCTGATACCGACACGGGGGTGAGGAGGCAATGGGTGAATTGCAGAAACCTCAGGAGAATGAGTGGAATCGTAGCGTGTGCTGCAGAAAGGAATGGGAATGGCAGGGGAAAGAGTCGGAGTACGAGTCGAAGTTCTAGTCCGAGCTCGTTTCTCTCTCGGAGCCACACCTACGCCCTCTTGAAGCAGCAAATGGAGGTCGCTGCCAAATCCGAGGACTACAAAGAAGCAGCAAGAATTCGTGATTCGATAAAATTATTTGAAGACGAGGAGCCAATTTTGCGTCTGCGGCGATTAATGAAAGAAGCCATTGCTGATGAGAGGTTTAAGGATGCAGCTAAATATCGTGATGAGCTAATAGAAATTGCTCCGCACTCTCTTTTAAAATGTTCCAGTGATGCTACAACCTTAGGAATCAGGGTTCAAGTTAGGAGTGTATATATAGAGGGCAGAAGTCAGCCTTCAAAGGGGCTGTACTTCTTTGCATATAGAATCAGAATTACAAACAACTCTGACCGCCCTGTTCAACTTCTTAGAAGGCATTGGATTATAACTGATGCAAATGGGAAAACAGAAAATGTTTGGGGGATCGGGGTTGTTGGTGAACAGCCAGTTATGCTTCCTAGGACTAGTTTTGAATACTCTTCAGCATGCCCAATAAGCACACCAAATGGTAGAATGGAAGGTGACTTTGAGATGATACACGTTGATAGAGTAGGCTCACCATCATTTAATGTGGCTATTGCTCCCTTCTCTCTCTCTCTGCTTCAAGATGATGATGGTCATACTATTTGA 861 0.4576 MQSLSAKAALMELRVPGPGGSGFADTDTGVRRQWVNCRNLRRMSGIVACAAERNGNGRGKSRSTSRSSSPSSFLSRSHTYALLKQQMEVAAKSEDYKEAARIRDSIKLFEDEEPILRLRRLMKEAIADERFKDAAKYRDELIEIAPHSLLKCSSDATTLGIRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDRPVQLLRRHWIITDANGKTENVWGIGVVGEQPVMLPRTSFEYSSACPISTPNGRMEGDFEMIHVDRVGSPSFNVAIAPFSLSLLQDDDGHTI 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1301 286 Pfam UvrB/uvrC motif 83 110 IPR001943 GO:0005515
Glsi13g1301 286 Pfam UvrB/uvrC motif 113 144 IPR001943 GO:0005515
Glsi13g1301 286 MobiDBLite consensus disorder prediction 57 73 - -
Glsi13g1301 286 PANTHER OS05G0170800 PROTEIN 42 282 - -
Glsi13g1301 286 Pfam ApaG domain 173 256 IPR007474 -
Glsi13g1301 286 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 79 110 IPR036876 -
Glsi13g1301 286 Gene3D ApaG domain 151 284 IPR036767 -
Glsi13g1301 286 ProSiteProfiles UVR domain profile. 112 147 IPR001943 GO:0005515
Glsi13g1301 286 ProSiteProfiles UVR domain profile. 77 112 IPR001943 GO:0005515
Glsi13g1301 286 MobiDBLite consensus disorder prediction 51 73 - -
Glsi13g1301 286 ProSiteProfiles ApaG domain profile. 155 282 IPR007474 -
Glsi13g1301 286 SUPERFAMILY ApaG-like 157 276 IPR036767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1301 Glsi-ChrGlsi13 30420448 30423816 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0693 02 4507495 4510372 Glsi13g1301 13 30420448 30423816 CCT
Glsi13g1301 13 30420448 30423816 Glsi13g1301 13 30420448 30423816 ECH