Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1284 ATGATCAGCTGTTTGATATTGGTTGTCCCTGTGAATTTGGTTCCTGAAGAAGTAAAGATGCCGGGAATTGTTATAAATGGAGTTGAACATGATGGGAGTGCAATTGAAATGAATGGGAACCCTTCCCCTTGTAAGGAAACCACAAATCCCATCAAGCCTCAGAGGAGTTCCTTGAGTCTACAAAGGCAAAGCCCTCAGAATGCAGGTCCAAATTTTCCTGTTGATGGAGTGGTTGACACCTCGATTGAGCAGCTTTATGAAAATGTCTGTGACTTGCAAAGTTCTGATCAGTCACCGTCAAGACAAAGTATTGGATCTGATGGTGAGGAGTCTAGGATTGATTCAGAGTTGCATCATCTAGTTGGAGGACAGATGAGGGAGGTGGAAATAATGGAAGAGGAAGTGGAGGGAAGGTCAGGAGGTGATTCCAGTACTGAAACATCTTCTCGAAAAGGAACTTCAGCAAATGATAAGAAGTTGCTACAGGTGGATGAGAAGATTCAATCTGCAAGTACAAGTTCTGTTTCTTCTGAAAAATCAAACGAAGCATCAAATTCACAGGTGGACCCTGAAACATCATCAAAATCCAAAGGAAAAATTCCTCCTGCAAAGCCTCCTATTGATGGGAGGAGTGATAAACCTTTGAGAAAACAAAATAAGCGAGTTACTAGTGTGAAAAAATCGAAGAATTCTCCTTTTGGAAGGTTAAAGTCACAAAATGGCACTGATAATTCGACTGAATCAGCATCAGATAAGTCAGAGTTGGGCCCAATGTTACTGAAGCGAGCAAGGGATTTGATTACATCTGGAGATAATCCGCAGAAAGCTCTTGTATTAGCTCTTCAAGCAATGAAATTGTTTGAGAAGTATGCTAATGGAAAACCAAGTTTGGAGCTGGTTATGTGCTTACATGTCACTGCAGCAATACATTGCAACTTGGGCCGATATGATGAGGCCATTCCAATGCTTGAGCGCTCCATTGAGATTCCAGTTATCGAGGAAGGCCAAGAGCATGCCCTTGCTAAGTTTGCAGGTCACATGCAACTAGGTGACACGTATGCAATGTTGGGCCAGCTTGAAAATTCAATTATGTGCTACAGCACAGGGTTGGAAGTCCAGAGGCAAGTTTTGGGAGAATCTGACCCAACGGTTGGTGAAACTTGTAGGTACGTAGCTGAAGCACATGTTCAAGCATTGCAGTTTGATGAGGGAGAGAGGCTCTGCCAAATGGCTCTCGACATTCACAGAGCAAATGGTTCACCCCCTTCTCTTGAAGAGGCAGCTGATAGGAGGCTCATGGGCCTTATATGTGAAACAAAGGGAAATCATGAAGCAGCTCTCGAGCATCTTGTTTTAGCTAGCATGGCAATGGTAGCTAATGGCCAGGAAGTGGAAGTCGCCTCTGTTGACAGCAACATTGGTGACACATACTTATCCTTGTCTCGTTATGATGAAGCTGTTTTTTCTTATCAGAAAGCACTTACAGTTTTCAAGACCAGCAAAGGAGAGAATCATCCGGCTGTGGGATCAGTCTTTGTACGTCTGGCTGACTTGTATAACAGGACGGGGAAGATAAGGGAATCAAAATCTTACTGTGAGAGTGCACTTAGAATCTATGAGAAGCCCATGCCTGGGGTCCCTCCCGAGGAGATTGCGAGTGGTCTTATGGATGTTTCAGCTATCTACGAGTCAATGAATGAGCTTGAACGGGCACTCAAGTTACTGCGCAAGGCATTGGAGATATATATCGATGCCCCTGGTCAGCAAAGCACAATAGCAGGAATTGAAGCTCAGATGGGGGTCATGCACTACATGTTGGGGAACTATACTGAATCTTACAACACTTTGAAGAATGCTATCGCAAAGCTTCGTGCTATTGGAGAGAAGAAATCATCCTTCTTTGGTATTGCACTAAATCAAATGGGACTTGCTTGTGTGCAGTGCTATGCGTTAGGTGAGGCTACAGAGCTGTTTGAAGAAGCAAAGAATATATTGGAAAATGAGTATGGACCATATCACCCTGAAACGCTGGGGGTATATAGCAATCTTGCTGGCACGTATGATGCAATTGGCAGGGCAGATGAAGCAATTCAAATTCTGGAGTATGTTGTAAGTACGAGGGAGGAAAAACTAGGGACAGCTAATCCTGATGTGGATGATGAGAAGAGAAGGTTGGGTGAATTATTGAAGGAAGCAGGTAGAGTTCGAAGCAGAACAGCCAGGTCACTCGAGAACCTTCTTGATACCAATGCTCCTCCTGTAAACAATAACCCTGTCATCAACGTCGGATAA 2292 0.4389 MISCLILVVPVNLVPEEVKMPGIVINGVEHDGSAIEMNGNPSPCKETTNPIKPQRSSLSLQRQSPQNAGPNFPVDGVVDTSIEQLYENVCDLQSSDQSPSRQSIGSDGEESRIDSELHHLVGGQMREVEIMEEEVEGRSGGDSSTETSSRKGTSANDKKLLQVDEKIQSASTSSVSSEKSNEASNSQVDPETSSKSKGKIPPAKPPIDGRSDKPLRKQNKRVTSVKKSKNSPFGRLKSQNGTDNSTESASDKSELGPMLLKRARDLITSGDNPQKALVLALQAMKLFEKYANGKPSLELVMCLHVTAAIHCNLGRYDEAIPMLERSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSIMCYSTGLEVQRQVLGESDPTVGETCRYVAEAHVQALQFDEGERLCQMALDIHRANGSPPSLEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEVEVASVDSNIGDTYLSLSRYDEAVFSYQKALTVFKTSKGENHPAVGSVFVRLADLYNRTGKIRESKSYCESALRIYEKPMPGVPPEEIASGLMDVSAIYESMNELERALKLLRKALEIYIDAPGQQSTIAGIEAQMGVMHYMLGNYTESYNTLKNAIAKLRAIGEKKSSFFGIALNQMGLACVQCYALGEATELFEEAKNILENEYGPYHPETLGVYSNLAGTYDAIGRADEAIQILEYVVSTREEKLGTANPDVDDEKRRLGELLKEAGRVRSRTARSLENLLDTNAPPVNNNPVINVG 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1284 763 Gene3D Tetratricopeptide repeat domain 628 742 IPR011990 GO:0005515
Glsi13g1284 763 Gene3D Tetratricopeptide repeat domain 454 627 IPR011990 GO:0005515
Glsi13g1284 763 ProSiteProfiles TPR repeat profile. 552 585 IPR019734 GO:0005515
Glsi13g1284 763 Pfam Tetratricopeptide repeat 307 334 IPR019734 GO:0005515
Glsi13g1284 763 Gene3D Tetratricopeptide repeat domain 346 453 IPR011990 GO:0005515
Glsi13g1284 763 MobiDBLite consensus disorder prediction 91 106 - -
Glsi13g1284 763 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 63 750 - -
Glsi13g1284 763 Gene3D Tetratricopeptide repeat domain 250 345 IPR011990 GO:0005515
Glsi13g1284 763 MobiDBLite consensus disorder prediction 133 255 - -
Glsi13g1284 763 MobiDBLite consensus disorder prediction 40 70 - -
Glsi13g1284 763 MobiDBLite consensus disorder prediction 91 113 - -
Glsi13g1284 763 SUPERFAMILY TPR-like 282 713 IPR011990 GO:0005515
Glsi13g1284 763 Pfam Tetratricopeptide repeat 637 701 - -
Glsi13g1284 763 Pfam Tetratricopeptide repeat 466 541 - -
Glsi13g1284 763 ProSiteProfiles TPR repeat profile. 467 500 IPR019734 GO:0005515
Glsi13g1284 763 MobiDBLite consensus disorder prediction 225 252 - -
Glsi13g1284 763 MobiDBLite consensus disorder prediction 165 194 - -
Glsi13g1284 763 MobiDBLite consensus disorder prediction 38 76 - -
Glsi13g1284 763 Coils Coil 558 585 - -
Glsi13g1284 763 SMART tpr_5 552 585 IPR019734 GO:0005515
Glsi13g1284 763 SMART tpr_5 635 668 IPR019734 GO:0005515
Glsi13g1284 763 SMART tpr_5 343 376 IPR019734 GO:0005515
Glsi13g1284 763 SMART tpr_5 509 542 IPR019734 GO:0005515
Glsi13g1284 763 SMART tpr_5 677 710 IPR019734 GO:0005515
Glsi13g1284 763 SMART tpr_5 300 333 IPR019734 GO:0005515
Glsi13g1284 763 SMART tpr_5 385 418 IPR019734 GO:0005515
Glsi13g1284 763 SMART tpr_5 593 626 IPR019734 GO:0005515
Glsi13g1284 763 SMART tpr_5 467 500 IPR019734 GO:0005515
Glsi13g1284 763 MobiDBLite consensus disorder prediction 141 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1284 Glsi-ChrGlsi13 30206020 30209403 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0709 02 4639307 4643625 Glsi13g1284 13 30206020 30209403 CCT
Glsi02g0709 02 4639307 4643625 Glsi13g1284 13 30206020 30209403 ECH
Glsi13g1284 13 30206020 30209403 Glsi13g1284 13 30206020 30209403 ECH