Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0709 ATGCTGCAAAATTCGATATTGTATTCTTCCCACTTGAACGAAGTTGCTTTCGCTTGCTCCATATGTAGCCATTACCTTGATTTTAAGAAAGCCTGTCCTTTTATTATAAGATTTTCAGTCAATCAAATTATTTTATTGAATCGTAGTCCAACTTATAGCTGTATTCGTGTTTTGCAATCCGGGCCCACCTTGTTCTCTCCCCTTCGTGCTGTTCACTACCGTTCCTGTTTCTTGAATACGTTGTTCGACCATCCGCACATGAGGCATTTGAAACACACCCTTTGGTGCTCATTTCCATGGTTGATTATTAAGATTATCTGTTTGATAGTTACAAATGGGGTTAATGATGAGGGGGAAGTAAATGAAAGGAATACGAACTCTTCACCCTGTAAGGAAACCTCAACTTCAATCAAGCCCCAAAGGAGTTCCTCGAGTCCGCAAAACCCCCAGAGTGCAGGTCCTGTTGATGGGGTGGTTGACACCTCGCTTGAGCAGCTTTATGAAAATGTCTGTGACATGCAAAGTTCTGATCAGTCCCCCTCAAGGCAAAGTTTTGGATCTGATAGTGATGAGTCTAGGATTGATTCCGAATTGCACCATCTAGTTGGAGGACATAGGAGGGAGGTAGAGATAATAGAAGAGGAAGTGGAAGAAAATCCAGGAGGTGATTACACTAGTAGTGAAACATCTTCTAGAAAGGGTAATCCATCGAAGGAGAAGCAGTTGGAAAATGTGGTTGAGATTCAATCTGCAAGTACAAGTTCCGTCGCTTCTGAAAAATCAAACAAAGTGTCCGTCGCTTCTGATAAATCAAACAAAGCATCCAATTCACAGTTACAACCTAAAGCACCATTAAAATCAAGACCCAAAGGCAAAAGTCCTCCTGCAAAGCCTCCCGTTGACAGAAAGAATGACAAGCCTTCGAGAAAACAAAACACAGGAGTTACCAGTGTGAAGAAATCACAAAAATCTCCTTCTAGAAGGTTAAACTCACTAAATCGTGCCAAGAATTCAACTGAATCAGCATCAGATAAGCCAGAGACGGGACCAATTTTACTAAAGCAAGCAATGGATCTGATTTCCTCAGGGGATAATCTGCAGAAGGCTCTTGAAGTAGCTCTTCGAGCAATGAAATTGTTTGAGAAGTGTGCCAATGAGAAACCAAGTTTGGAGCTTGTTATGTGTTCACACGTTACAGCAGCCGTATATTGTAGCTTGGGTCAATACAATGAGGCAATTCCAATTCTTGAGCGCTCGATAGAGATTCCTGTTATTGAGGAAGGCCAAGAGCATGCCCTTGCTAAATTTGCTGGTCATATGCAACTGGGAGACACCTATGCAATGCTGGGTCAGCTAGAGAATTCAATTATGTGCTACACCATAGGTATGGAAGTCCAGAGACAGGTTTTGGGAGAGACAGACCCAAGAGTTGGTGAAACTTGTAGGTATCTGGCTGAAGCTTATGTTCAAGCATTACAATTTGATGAAGCTGAGAGATTCTGCCAAATGGCTCTGGACACCCATAGAGCAAATGATTCACCTCCATCTCTTGAAGAGGCAGCTGATAGGAGGCTCATGGGCCTCATATGCGAAACAAAGGGAAATCATGAAGCAGCTCTGGAGCATCTTGTTTTAGCAAGCATGGCGATGGTAGCAAATGGCCAGGAAGTGGAAGTGGCATCTGTTGACTGCAGCATTGGAGACAGTTACTTATCCTTGTCTCGATATGATGAGGCTATTTTTGCTTATCAGAAAGCACTTACAGTTTTCAAGGCCAGCAAAGGAGAGAATCATCCAGCTGTGGGTTTAGTTTTTGTACGTCTAGCTGACTTGAATAATAGGACAGGGAAGATAAAGGAATCAAAATCTTACTGTGAGAGTGCACTTAAAATCTATGAGAATCCTGTGCCTGGGGTCCCTCCCGAGGTTATTGCAAGTGGTCTTACAGATGTTTCAGCTATCTATGAGTCAATGAATGAGCATGAGCGAGCACTCAATTTACTGCAAAAGGCATTGGATATATATAACAATGCCCCTGGTCAGCAAAGCACAATAGCAGGAATTGAAGCTCAGATGGGGGTCTTGTACTACATCTTGGGCCACTATACTGAATCTTACACCACTTTCAAGAGTGCTATCTCAAAGCTTCGTGCTATTGGAGAGAAGAAATCAGCCTTCTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTACAGCGTTACGCACTAAGCGAAGCTGCTGAATTGTTTGAAGAAGCAAAGAGTATTTTGGAACATGAGTATGGACCATATCACCCTGAAACACTTGGGGTATATAGCAATCTTGCTGGAGCTTATGATGCAATTGGCAGGGTGGATGATGCAATTGAAATTCTGGAGTATGTTGTGGGTTTAAGGGAGGAAAAACTTGGGACTGCAAATCCTGATGTCCATGATGAGAAGACAAGGTTGAATGAGTTGTTGAAAGAAGCAGGTAGAGTTCGGAGCAGAGAAGCCATATCACTTGAGAACCTTCTTGATGCCAATGCTTGTGCTCTAAATAACCTTGTCATAAGGATGGCTAGTTAG 2571 0.4267 MLQNSILYSSHLNEVAFACSICSHYLDFKKACPFIIRFSVNQIILLNRSPTYSCIRVLQSGPTLFSPLRAVHYRSCFLNTLFDHPHMRHLKHTLWCSFPWLIIKIICLIVTNGVNDEGEVNERNTNSSPCKETSTSIKPQRSSSSPQNPQSAGPVDGVVDTSLEQLYENVCDMQSSDQSPSRQSFGSDSDESRIDSELHHLVGGHRREVEIIEEEVEENPGGDYTSSETSSRKGNPSKEKQLENVVEIQSASTSSVASEKSNKVSVASDKSNKASNSQLQPKAPLKSRPKGKSPPAKPPVDRKNDKPSRKQNTGVTSVKKSQKSPSRRLNSLNRAKNSTESASDKPETGPILLKQAMDLISSGDNLQKALEVALRAMKLFEKCANEKPSLELVMCSHVTAAVYCSLGQYNEAIPILERSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSIMCYTIGMEVQRQVLGETDPRVGETCRYLAEAYVQALQFDEAERFCQMALDTHRANDSPPSLEEAADRRLMGLICETKGNHEAALEHLVLASMAMVANGQEVEVASVDCSIGDSYLSLSRYDEAIFAYQKALTVFKASKGENHPAVGLVFVRLADLNNRTGKIKESKSYCESALKIYENPVPGVPPEVIASGLTDVSAIYESMNEHERALNLLQKALDIYNNAPGQQSTIAGIEAQMGVLYYILGHYTESYTTFKSAISKLRAIGEKKSAFFGIALNQMGLACVQRYALSEAAELFEEAKSILEHEYGPYHPETLGVYSNLAGAYDAIGRVDDAIEILEYVVGLREEKLGTANPDVHDEKTRLNELLKEAGRVRSREAISLENLLDANACALNNLVIRMAS 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0709 856 MobiDBLite consensus disorder prediction 188 213 - -
Glsi02g0709 856 Pfam Tetratricopeptide repeat 729 794 - -
Glsi02g0709 856 Pfam Tetratricopeptide repeat 559 634 - -
Glsi02g0709 856 MobiDBLite consensus disorder prediction 172 187 - -
Glsi02g0709 856 MobiDBLite consensus disorder prediction 242 283 - -
Glsi02g0709 856 MobiDBLite consensus disorder prediction 310 345 - -
Glsi02g0709 856 SUPERFAMILY TPR-like 393 806 IPR011990 GO:0005515
Glsi02g0709 856 ProSiteProfiles TPR repeat profile. 645 678 IPR019734 GO:0005515
Glsi02g0709 856 MobiDBLite consensus disorder prediction 118 157 - -
Glsi02g0709 856 SMART tpr_5 478 511 IPR019734 GO:0005515
Glsi02g0709 856 SMART tpr_5 686 719 IPR019734 GO:0005515
Glsi02g0709 856 SMART tpr_5 436 469 IPR019734 GO:0005515
Glsi02g0709 856 SMART tpr_5 602 635 IPR019734 GO:0005515
Glsi02g0709 856 SMART tpr_5 728 761 IPR019734 GO:0005515
Glsi02g0709 856 SMART tpr_5 770 803 IPR019734 GO:0005515
Glsi02g0709 856 SMART tpr_5 645 678 IPR019734 GO:0005515
Glsi02g0709 856 SMART tpr_5 560 593 IPR019734 GO:0005515
Glsi02g0709 856 SMART tpr_5 393 426 IPR019734 GO:0005515
Glsi02g0709 856 ProSiteProfiles TPR repeat profile. 560 593 IPR019734 GO:0005515
Glsi02g0709 856 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 147 843 - -
Glsi02g0709 856 Coils Coil 658 678 - -
Glsi02g0709 856 Gene3D Tetratricopeptide repeat domain 547 721 IPR011990 GO:0005515
Glsi02g0709 856 Gene3D Tetratricopeptide repeat domain 722 833 IPR011990 GO:0005515
Glsi02g0709 856 MobiDBLite consensus disorder prediction 118 155 - -
Glsi02g0709 856 MobiDBLite consensus disorder prediction 172 349 - -
Glsi02g0709 856 Gene3D Tetratricopeptide repeat domain 439 546 IPR011990 GO:0005515
Glsi02g0709 856 MobiDBLite consensus disorder prediction 295 309 - -
Glsi02g0709 856 Gene3D Tetratricopeptide repeat domain 229 438 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0709 Glsi-ChrGlsi02 4639307 4643625 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0709 02 4639307 4643625 Glsi13g1284 13 30206020 30209403 CCT
Glsi02g0709 02 4639307 4643625 Glsi13g1284 13 30206020 30209403 ECH
Glsi02g0709 02 4639307 4643625 Glsi02g0709 02 4639307 4643625 ECH