Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1241 ATGGAGTATCGCCGATCTTATAGTGGCTCTTCTTCTTCCTCAAACCACCTTCAACCAGGGCTAAAGTCTCTGTCTTCACAACGCAGCCTCGCATCTGTTCCTTCCCTTAATTCACAATCTCATCGCCAGCCAGAAAACCATCCTTCCAGCACCTATCACCAGTGCCTGACAACTCTGAAAGGTCACAAATCCTACGTATCCTCTCTAACCCTTTCTGGGAAGTTCCTCTACACGGGTTCATCTGATAGAGAAATCAGATCCTGGAATTGTACCCTTTTCCCCTCTGAATTTGACCCAAAACATTCAATCACCAACATGGTAATTTCTGGAAAGGGTGCGGTGAAGTCCCTAATAGTTCAATCTGATAAGCTTTTTAGCGCTCACCAAGACCACAAAATCCGGGTGTGGAAGATTAGCAACTACAAATCTAACCACCAGAAGTACACGTGTTTAGCTACCCTTCCAACTTTGGGTGATCGTGCCACTAAGCTTTTGATCCCCAAGAACCATGTCCAGATCAGAAGGCACAAGAAATGCACCTGGGTTCATCATGTGGACACAGTTTCTGCTCTGGCCTTGTCCAGAGACGAAACCTTGCTCTATTCAGTATCATGGGATCGAACAATCAAAATATGGCGAACCAGAAACTTCACTTGTTTAGAATCAGTAAGCAACGCACATGACGATGCCATAAACGCGGTTGCAGTTTCTAATGATGGGCATGTTTACACTGGATCAGCAGATAAGAGAATAAGGGTGTGGAAGAAAAATCAAGGAGAAAAGAAGCACTCTCTGGTTGATACGTTAGAGAAACACAACTCTGGGATCAATGCGTTGGCTCTGTGCAGTGATGGGTCTCTGCTGTATTCTGGGGCGTCTGATAGGTCGATATTGGTTTGGGAGAAGGATGACGATGGAAAAATGGTGGTGGTAGGTGCGCTTAGGGGGCACACTAATTCTATATTGTGCTTGGCTGTGGTGTCGGATTTGGTGTGTAGTGGTTCTGCTGATAAAACAATTCGAATTTGGAGAGGTGTTGAAAAAGAGTATTCATGTTTAGCAGTTTTAGAAGGGCATAAAAGTGCGGTTAAGTGCCTAACTGCGGCGGTTGATCGTTGCAGTCCATCTGAAGCATCTTTTCTTGTCTACAGTGGCAGTTTGGACTGTGATATTAAGATGTGGCAGATTGCCGTTCCTGTTTACTAG 1206 0.4502 MEYRRSYSGSSSSSNHLQPGLKSLSSQRSLASVPSLNSQSHRQPENHPSSTYHQCLTTLKGHKSYVSSLTLSGKFLYTGSSDREIRSWNCTLFPSEFDPKHSITNMVISGKGAVKSLIVQSDKLFSAHQDHKIRVWKISNYKSNHQKYTCLATLPTLGDRATKLLIPKNHVQIRRHKKCTWVHHVDTVSALALSRDETLLYSVSWDRTIKIWRTRNFTCLESVSNAHDDAINAVAVSNDGHVYTGSADKRIRVWKKNQGEKKHSLVDTLEKHNSGINALALCSDGSLLYSGASDRSILVWEKDDDGKMVVVGALRGHTNSILCLAVVSDLVCSGSADKTIRIWRGVEKEYSCLAVLEGHKSAVKCLTAAVDRCSPSEASFLVYSGSLDCDIKMWQIAVPVY 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1241 401 SUPERFAMILY WD40 repeat-like 54 396 IPR036322 GO:0005515
Glsi13g1241 401 SMART WD40_4 174 213 IPR001680 GO:0005515
Glsi13g1241 401 SMART WD40_4 307 344 IPR001680 GO:0005515
Glsi13g1241 401 SMART WD40_4 349 395 IPR001680 GO:0005515
Glsi13g1241 401 SMART WD40_4 216 255 IPR001680 GO:0005515
Glsi13g1241 401 SMART WD40_4 262 301 IPR001680 GO:0005515
Glsi13g1241 401 SMART WD40_4 52 89 IPR001680 GO:0005515
Glsi13g1241 401 SMART WD40_4 100 137 IPR001680 GO:0005515
Glsi13g1241 401 Gene3D - 172 259 IPR015943 GO:0005515
Glsi13g1241 401 Gene3D - 260 399 IPR015943 GO:0005515
Glsi13g1241 401 MobiDBLite consensus disorder prediction 1 52 - -
Glsi13g1241 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Glsi13g1241 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 89 IPR001680 GO:0005515
Glsi13g1241 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 343 - -
Glsi13g1241 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 255 - -
Glsi13g1241 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 264 IPR001680 GO:0005515
Glsi13g1241 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 301 IPR001680 GO:0005515
Glsi13g1241 401 CDD WD40 55 395 - -
Glsi13g1241 401 FunFam BnaA09g28200D protein 171 259 - -
Glsi13g1241 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 343 IPR001680 GO:0005515
Glsi13g1241 401 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 15 397 IPR045182 -
Glsi13g1241 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 89 - -
Glsi13g1241 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Glsi13g1241 401 Gene3D - 36 171 IPR015943 GO:0005515
Glsi13g1241 401 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Glsi13g1241 401 Pfam WD domain, G-beta repeat 182 212 IPR001680 GO:0005515
Glsi13g1241 401 Pfam WD domain, G-beta repeat 219 255 IPR001680 GO:0005515
Glsi13g1241 401 Pfam WD domain, G-beta repeat 351 394 IPR001680 GO:0005515
Glsi13g1241 401 Pfam WD domain, G-beta repeat 312 343 IPR001680 GO:0005515
Glsi13g1241 401 Pfam WD domain, G-beta repeat 266 300 IPR001680 GO:0005515
Glsi13g1241 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1241 Glsi-ChrGlsi13 29760698 29761903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1241 178 397 Acyl Lipid Metabolism Gene Families AT3G18860 25.431 2.41e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0748 02 4870566 4871771 Glsi13g1241 13 29760698 29761903 CCT
Glsi02g0748 02 4870566 4871771 Glsi13g1241 13 29760698 29761903 ECH
Glsi13g1241 13 29760698 29761903 Glsi13g1241 13 29760698 29761903 ECH