Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0748 ATGGAATGCCACCGATCTTATAGTCACTCTTCGTCTTCGTCTAACCCTCTTCAACAAAGACTAACCCCTGTGTCTTCACAACGCAGCCTCGCGTCGGTTCCTTCCCTTAACTCACACTCTCGCCACCATCTAGAAAACCATCCCTCCAGCACCTATCACCACTGCCTTGCAACTCTCAAGGGCCACACATCCTATATATCCTGTCTAACCCTTGCTGGCAAATTCCTCTACACGGGATCATCTGACAGAGAAATCAGGTCCTGGAATCATGCCCCTTTTCACTCTGAATTCGATCCTGAACATTCAATAACTAACATGGTAACTGCAGGAAAAGGTGCAGTGAAGTCCCTAATAGTTCAATCTGATAAGCTTTTTAGTGCTCACCAAGACTATAAAATCCGGGTATGGAAGATTAGCAACTATGAGCCTGATCACCAGAAGTACACCCGTTTAGCCACTCTTCCGACGTTTGGTGACCGTGCCTTAAAGGTTTTGAACCCCAAGAATCATGTTCAGATTAGAAGGCACAAAAAATGCACCTGGGTTCATCATGTTGACACAGTTTCAGCTCTGGCCTTATCCAGTGACGAGACGTTGCTCTATTCAGTTTCATGGGATAGGACAATCAAAATTTGGCAAACTAGTGATTTCACCTGTTTAGAATCAGTAAACAACGCACATGATGATGCTATAAATTCAGTTGCAGTTTCTGATGATGGCTATGTTTACACTGGATCAGCTGATAAGAAAATTAAGGTGTGGAAGAAAGGCCAAGGAGAAAAGAAACATTGTCTGATTGATACGTTAGAAAAACACAACTCTGGGATTAATGCGTTGGCTCTGAGCAGTGATTGGTCTCTGTTGTATTCTGGTGCATGTGACAGATCTATATTGGTTTGGGAGAAGGGCGAAGATGGCGAAATGATGGTAGTAGGTGCGCTCAGGGGCCACAACAAGTCTATATTGTGCTTGGCCGTGGTCTCGGATTTGGTTTGTAGTGGTTCTGCGGACAAAACCATAAGAATTTGGAGAGGGGTTCACAAAAATTACTCTTGTTTAGCTGTTTTAGAAGGGCACAGGGGTCCGGTTAAGTGCCTAACGGCAGTGATCGATCGTTGCAATCCATCTGAAGAATCTTTTCTAGTCTATAGTGGCAGTTTGGACTGTGACATTAAGGTGTGGCAGATCTTTGTTCCTGTTCTCTAG 1206 0.4428 MECHRSYSHSSSSSNPLQQRLTPVSSQRSLASVPSLNSHSRHHLENHPSSTYHHCLATLKGHTSYISCLTLAGKFLYTGSSDREIRSWNHAPFHSEFDPEHSITNMVTAGKGAVKSLIVQSDKLFSAHQDYKIRVWKISNYEPDHQKYTRLATLPTFGDRALKVLNPKNHVQIRRHKKCTWVHHVDTVSALALSSDETLLYSVSWDRTIKIWQTSDFTCLESVNNAHDDAINSVAVSDDGYVYTGSADKKIKVWKKGQGEKKHCLIDTLEKHNSGINALALSSDWSLLYSGACDRSILVWEKGEDGEMMVVGALRGHNKSILCLAVVSDLVCSGSADKTIRIWRGVHKNYSCLAVLEGHRGPVKCLTAVIDRCNPSEESFLVYSGSLDCDIKVWQIFVPVL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0748 401 MobiDBLite consensus disorder prediction 1 47 - -
Glsi02g0748 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 301 IPR001680 GO:0005515
Glsi02g0748 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 213 - -
Glsi02g0748 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 255 IPR001680 GO:0005515
Glsi02g0748 401 MobiDBLite consensus disorder prediction 1 39 - -
Glsi02g0748 401 SMART WD40_4 216 255 IPR001680 GO:0005515
Glsi02g0748 401 SMART WD40_4 262 301 IPR001680 GO:0005515
Glsi02g0748 401 SMART WD40_4 174 213 IPR001680 GO:0005515
Glsi02g0748 401 SMART WD40_4 52 89 IPR001680 GO:0005515
Glsi02g0748 401 SMART WD40_4 307 344 IPR001680 GO:0005515
Glsi02g0748 401 SMART WD40_4 349 395 IPR001680 GO:0005515
Glsi02g0748 401 SMART WD40_4 100 137 IPR001680 GO:0005515
Glsi02g0748 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 343 IPR001680 GO:0005515
Glsi02g0748 401 FunFam BnaA09g28200D protein 171 259 - -
Glsi02g0748 401 Pfam WD domain, G-beta repeat 351 394 IPR001680 GO:0005515
Glsi02g0748 401 Pfam WD domain, G-beta repeat 225 255 IPR001680 GO:0005515
Glsi02g0748 401 Pfam WD domain, G-beta repeat 182 212 IPR001680 GO:0005515
Glsi02g0748 401 Pfam WD domain, G-beta repeat 266 300 IPR001680 GO:0005515
Glsi02g0748 401 Pfam WD domain, G-beta repeat 55 89 IPR001680 GO:0005515
Glsi02g0748 401 Pfam WD domain, G-beta repeat 312 343 IPR001680 GO:0005515
Glsi02g0748 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 343 - -
Glsi02g0748 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 301 - -
Glsi02g0748 401 Gene3D - 150 260 IPR015943 GO:0005515
Glsi02g0748 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 255 - -
Glsi02g0748 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 89 IPR001680 GO:0005515
Glsi02g0748 401 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
Glsi02g0748 401 CDD WD40 55 395 - -
Glsi02g0748 401 PRINTS G protein beta WD-40 repeat signature 200 214 IPR020472 -
Glsi02g0748 401 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Glsi02g0748 401 PRINTS G protein beta WD-40 repeat signature 382 396 IPR020472 -
Glsi02g0748 401 Gene3D - 261 398 IPR015943 GO:0005515
Glsi02g0748 401 SUPERFAMILY WD40 repeat-like 54 396 IPR036322 GO:0005515
Glsi02g0748 401 Gene3D - 46 149 IPR015943 GO:0005515
Glsi02g0748 401 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 89 - -
Glsi02g0748 401 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 396 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0748 Glsi-ChrGlsi02 4870566 4871771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g0748 178 401 Acyl Lipid Metabolism Gene Families AT3G18860 27.119 4.65e-08 53.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0748 02 4870566 4871771 Glsi13g1241 13 29760698 29761903 CCT
Glsi02g0748 02 4870566 4871771 Glsi13g1241 13 29760698 29761903 ECH
Glsi02g0748 02 4870566 4871771 Glsi02g0748 02 4870566 4871771 ECH