Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1208 ATGAAGAGAGGCAGATTAGAAAAATTAGATACTTTTGTGTCATTAACTAGGCAAAGATCCATTCAGATTCTGATCGGTGTTGGACTTTTGTACATACTGTTGGTCACAGTGGAAATCCCTTTTGTATTCAAAACTGGGTTCAGTTCTGTGTCTCAGGAGTTCTTGACTCGCCCGTCTAGACTGGAGAGCGAGGAGGACTTGGAAGAAAGAAAAGCCCCTACTCGCCCGCTGGAAAGGGTTTCGCTAAACGCTTACGAACCGACTCAGAGCCAACTTGCTGAGCACAAGATTCTGTCTGGGTTGATCTTCGATGACAGTACATTTGATTTGCGGCGCAAGGATGGGTCTATGGAGCTTTACAAGTCGGCAAAGAATGCTTGGGAAGTGGGGAAGAAGATTTGGGGAGAGCTAGAATCGGGGAACTTGCGGGCCGCCGCTAGGAAGTCCGAGAACCGATCGGATTTATGCCCGCGCTCTATTTCGTTACCAGGGTCGGAGTTTTTGGCTCATGGGCGAGTCATGGTCCTTCCTTGTGGACTGACATTGGGCTCCCACCTAACGGTTGTGGCAAAGCCGTTGGCGGCGCACGCAGAGTTTGAACCGAAGATATCTTTGGTGAAGGATGATGATGAACCAGTGATGGTGTCGCAATTCATGATGGAGTTGCAGGGTTTGAAGGCAGTGGACGGTGAGGACCCCCCTAGGATTTTGCATTTTAATCCCAGATTGAAAGGAGATTGGAGTGGGAAGCCTGTAATTGAGCTAAACACCTGTTACAGAATGCAGTGGGGTTCGGCACTGCGGTGTGATGGTTGGAAATCGAAGGCTGATGAAGAGACTGTTGATGGGCTAGTGAAGTGTGAGAAGTGGATTCGGGATGGTGACAATCATGCAGAGGAGTCTAAGGCAAGATGGTGGTTGAATAGACTGATAGGCCGAACAAAAAAAGTGACTGTTGATTGGCCATTCCCATTTTCAGAGAACAAGCTATTTGTTCTCACTCTTAGTGCTGGATTGGAGGGCTATCATGTTAATGTTGATGGGAGGCATGTGGCCTCTTTTCCTTATCGCACTGGTTTTACTCTTGAGGATGCCACTGGGATTTCTTTGAGTGGCGACATTGATGTTCATTCTGTATTTGCTGCCTCTTTGCCTTCATCACATCCAAGTTTTGCCCCACAGAAGCATCTTGACTGGTCAAGTAGATGGTGTGCCCCACCTCTGCCTGACTTAGAAGTTGAATTGTTCATCGGTATCCTTTCTGCTGGAAATCATTTTGCTGAGCGGATGGCAGTAAGGAAGTCATGGATGCAGCATAGGCTTATCAAATCTTCAAAAGTGGTGGCTCGTTTCTTTGTAGCACCGCATCTGAGAAAAGAAGTTAATGCAGAGTTAAAGAAGGAAGTAGAATTCTTTGGTGATATTGTTATAGTGCCTTACATGGATAACTATGACCTTGTTGTGCTGAAAACAGTGGCCATTTGTGAATATGGGGTTCGCACAGTTTCTGCCAAGTATATCATGAAGGGCGATGATGACACTTTTGTAAGAGTGGATGCTGTTTTGGATGTAGCAAGGAATGTTCCGGATGATAGGAGCTTTTATATTGGGAACATAAATTACTACCACAAGCCCTTGCGCTATGGTAAATGGGCTGTAACATACGAGGAGTGGCCAGAAGAGGATTACCCACCTTATGCTAATGGACCGGGTTATATTTTGTCTTCTGATATTGCACGCTATATTGTATCTGAATTTGAAAGTCATAAACTAAGGTTGTTTAAAATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAATTTAACAAGTCGAAACCAGTAGATTATTTGCATAGCTTAAAATTCTGCCAGTTTGGCTGCATAGAAGAGTATTACACAGCCCATTACCAATCGCCAAGGCAGATGATGTGTATGTGGGATAAATTGCAAAGGCAGACAAAGCCTCAGTGCTGCAATATGAGATGA 1986 0.4522 MKRGRLEKLDTFVSLTRQRSIQILIGVGLLYILLVTVEIPFVFKTGFSSVSQEFLTRPSRLESEEDLEERKAPTRPLERVSLNAYEPTQSQLAEHKILSGLIFDDSTFDLRRKDGSMELYKSAKNAWEVGKKIWGELESGNLRAAARKSENRSDLCPRSISLPGSEFLAHGRVMVLPCGLTLGSHLTVVAKPLAAHAEFEPKISLVKDDDEPVMVSQFMMELQGLKAVDGEDPPRILHFNPRLKGDWSGKPVIELNTCYRMQWGSALRCDGWKSKADEETVDGLVKCEKWIRDGDNHAEESKARWWLNRLIGRTKKVTVDWPFPFSENKLFVLTLSAGLEGYHVNVDGRHVASFPYRTGFTLEDATGISLSGDIDVHSVFAASLPSSHPSFAPQKHLDWSSRWCAPPLPDLEVELFIGILSAGNHFAERMAVRKSWMQHRLIKSSKVVARFFVAPHLRKEVNAELKKEVEFFGDIVIVPYMDNYDLVVLKTVAICEYGVRTVSAKYIMKGDDDTFVRVDAVLDVARNVPDDRSFYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSSDIARYIVSEFESHKLRLFKMEDVSMGMWVEQFNKSKPVDYLHSLKFCQFGCIEEYYTAHYQSPRQMMCMWDKLQRQTKPQCCNMR 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1208 661 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 172 382 IPR001079 GO:0030246
Glsi13g1208 661 SUPERFAMILY Concanavalin A-like lectins/glucanases 174 380 IPR013320 -
Glsi13g1208 661 FunFam Hydroxyproline O-galactosyltransferase GALT2 296 380 - -
Glsi13g1208 661 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 363 608 IPR002659 GO:0006486|GO:0016020|GO:0016758
Glsi13g1208 661 Pfam Galactoside-binding lectin 172 380 IPR001079 GO:0030246
Glsi13g1208 661 FunFam Hydroxyproline O-galactosyltransferase GALT4 171 289 - -
Glsi13g1208 661 SMART Gal_bind_lectin_2 176 381 IPR001079 GO:0030246
Glsi13g1208 661 Gene3D - 173 380 - -
Glsi13g1208 661 FunFam Hydroxyproline O-galactosyltransferase 406 649 - -
Glsi13g1208 661 Pfam Galactosyltransferase 428 608 IPR002659 GO:0006486|GO:0016020|GO:0016758
Glsi13g1208 661 Gene3D - 412 659 - -
Glsi13g1208 661 CDD GLECT 176 380 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1208 Glsi-ChrGlsi13 29556840 29560449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g1208 5 661 Glycosyltransferase AT1G74800 67.064 0.0 934
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0778 02 5035347 5038900 Glsi13g1208 13 29556840 29560449 CCT
Glsi13g1208 13 29556840 29560449 Glsi13g1208 13 29556840 29560449 ECH