Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g1043 ATGAGAAGCAACGGTAACCTGACAATAAACGACGACGTGGAGAGAAGGGAACCACGTTGTCGTCTGGTTGACGACGCGTTCATCTTTCTCACATTGCATTGCGTTTCATTTCCACTCGTCACTGAGGAAGTGATGAACTGTCCCACCCTCTTTACACAAATGACGAAGCTGCTTCTGCCCAACTCTCATCTCAGCTCCGTTCACCGATGCCCAACCTTCCTTGCTACTCCCTTCTTTTCCTCTACTGCCCCTGTCTCTCGCCTCCGTTTTCGATGCCGCTTCTCGCTTTCGGTTTCTTCTATCTCGCATCCTCAACCTCTCCGTCCCTTTAAGTCCCGTGGCGTCCCATCAGTTCGGGCCTTCGATTCTTCACCTTCCGACACTAAAGATGATAAAGAGGCTGTAGATGACCTGGTGGGGAAGGATGGGATTAATAATCAGAGTGTCAGAATTGCTGACGAGGATTATCCAAGCGGTGAGTTTGAATTTGAACCCATTACGGGGTGGAGAGGATTTCTTGTGAAGCTTAAGATGCTGGTTGCGTTCCCTTGGGAGCGTGTCCGCAAGGGCAGCGTTCTCACAATGAAGTTGCGCGGCCAGATATCCGATCAGATAAAGAGTAATTTCTCTCGGGGATTATCTCTGCCTCAAATTTGTGAGAACTTTTTGAAAGCAGCATATGATCCTCGTATATCTGGTATCTATCTTCATATTGATATTTTGAGTTGTGGGTGGGGTAAAGTTGAAGAAATCCGAAGATATATATTGAATTTCAAAAAATCAGGAAAATTTGTTGTGGCTTATGTCCCTTCATGTCAAGAAAAAGAATACTATCTTGCGTGTGCCTGTGATGAGATATATGCCCCTCCAAGTGCTTATTTTTCTTTGTTCGGCTTGACAGTTCAAGCCTCATTCCTCAGAGGTGTTTTAGATAACATAGGAATTGAACCGCAAGTGGAAAGGATTGGCAAATACAAAAGTGCAGGGGATCAACTAGCCCGTAGAACCATGTCTGAAGAAAATTGCGAGATGCTGACTGCATTGCTTGATAATATCTACACAAATTGGCTGGATAAAGTCTCTTCTGCAAAAGGAAAAAAAAGAGAAGATATTGAAAACTTCATAAATGAAGGTGTCTATCGAGTGGACAAGCTGAAAGAAGAGGGCTTGATAACAGACATAACCTATGATGATGAGGTTATTGCCATGTTGAAAGAGAGACTTGGAGTGAAAACAGATAAAAATCTTCCGATGGTGGATTACAGAAAATACTCCAGAGTTAGGAAATGGACTGTTGGAATATTGGGTGGTAAAGACCTGATAGCCATCATCCGAGCCTCAGGGAGTATTAGTCGTATTGAGGTTCCATTTAGTGTGTCAAGCTCAGGTATTATTGGAGAGAAGTTTATTGAGAAGATTCGCAATGTGAGAGAGTCAAAAAAATATAAGGCTGCCATTATACGAATTGACAGTCCTGGAGGTGATGCTCTTGCATCTGATTTGATGTGGAGAGAAATCAGACTTTTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGTGGTTACTATATGGCAATGGCAGCAGGAGCTATTGTTGCAGAAAGCCTCACTTTAACTGGTTCAATTGGAGTGGTTACAGGAAAATTTAACCTTGAGAAACTGTATGAGAAGATTGGCTTCAACAAGGAAATCATATCAAGGGGAAAATACGCTGAGCTCCTTGCTGCAGAACAACGTCCTTTTAGACCAGATGAAGCAGAATTATTTGCCAAGTCTGCTCAGCATGCTTATAAGCAATTTCGAGATAAGGCAGCATTTTCCAGATCGATGACTGTAGATAAGATGGAGGAGGTTGCACAGGGGAGAGTTTGGACTGGTAAAGATGCAGCTTCACATGGTTTGGTTGATGCCATTGGTGGGCTTTCTCGTGCAATTGCCATAGCAAAATGGAAGGCCAATATACCTGAAGACAAACAGGTCACAATTGTGGAGCTCTCAAGACCCAGCCCTTCTCTACCAGAGATTTTAAGTGGCCTTGGGAATACCCTGGTTGGAGTAGACAGAACATTCAAGGAGTTATTACAGAACTTGAAATTTTCTGATGGAGTTCAAGCCCGGATGGATGGAATCATGTTTGAGAGATTGGAAGGATATCCTTTCGCCAACCCCATTTTGACACTGATAAAAGATTACCTTAGTTCCCTGTAG 2226 0.4344 MRSNGNLTINDDVERREPRCRLVDDAFIFLTLHCVSFPLVTEEVMNCPTLFTQMTKLLLPNSHLSSVHRCPTFLATPFFSSTAPVSRLRFRCRFSLSVSSISHPQPLRPFKSRGVPSVRAFDSSPSDTKDDKEAVDDLVGKDGINNQSVRIADEDYPSGEFEFEPITGWRGFLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQIKSNFSRGLSLPQICENFLKAAYDPRISGIYLHIDILSCGWGKVEEIRRYILNFKKSGKFVVAYVPSCQEKEYYLACACDEIYAPPSAYFSLFGLTVQASFLRGVLDNIGIEPQVERIGKYKSAGDQLARRTMSEENCEMLTALLDNIYTNWLDKVSSAKGKKREDIENFINEGVYRVDKLKEEGLITDITYDDEVIAMLKERLGVKTDKNLPMVDYRKYSRVRKWTVGILGGKDLIAIIRASGSISRIEVPFSVSSSGIIGEKFIEKIRNVRESKKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMAAGAIVAESLTLTGSIGVVTGKFNLEKLYEKIGFNKEIISRGKYAELLAAEQRPFRPDEAELFAKSAQHAYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAIAIAKWKANIPEDKQVTIVELSRPSPSLPEILSGLGNTLVGVDRTFKELLQNLKFSDGVQARMDGIMFERLEGYPFANPILTLIKDYLSSL 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g1043 741 Gene3D - 585 710 - -
Glsi13g1043 741 NCBIfam signal peptide peptidase SppA 447 654 IPR004635 GO:0006508|GO:0008233
Glsi13g1043 741 Gene3D - 334 426 - -
Glsi13g1043 741 Gene3D - 190 333 - -
Glsi13g1043 741 SUPERFAMILY ClpP/crotonase 440 646 IPR029045 -
Glsi13g1043 741 MobiDBLite consensus disorder prediction 109 134 - -
Glsi13g1043 741 Pfam Peptidase family S49 258 410 IPR002142 GO:0006508|GO:0008233
Glsi13g1043 741 Pfam Peptidase family S49 509 659 IPR002142 GO:0006508|GO:0008233
Glsi13g1043 741 SUPERFAMILY ClpP/crotonase 179 396 IPR029045 -
Glsi13g1043 741 CDD S49_SppA_67K_type 193 406 IPR047217 -
Glsi13g1043 741 CDD S49_Sppa_N_C 441 655 IPR047272 -
Glsi13g1043 741 PANTHER PROTEASE 4 148 740 - -
Glsi13g1043 741 Gene3D - 437 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g1043 Glsi-ChrGlsi13 28478339 28485946 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0976 02 6460722 6469752 Glsi13g1043 13 28478339 28485946 CCT