Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g0976 ATGTCGAAGCTGGTTCTACACAGCTCTCGTTTCAGCTCCGTTCGCCGTTGCAAAACCTTCGTCGCAACTCTCTTCTCTTCTTCCTCTACTGCTCCTCTTTCTCGCTTCCAATGCCGCTTCATACTTTCTGTTCCATCTCATTCCCGACCTCTCCGACCCTTCCAGTCCCACAGATACCTATCACTTTGTGCATTCCATTCTTCTTCCTCCTTTTTCGACTCAAAATCGAAAGAAGAGCTGGTTGGGAAGGAGTCTAGGCCTGACGGTGGCATTAATAAACAAAGTGGTAGAATTGCCGATGAGGATTATCCAAGCGGTGACTTTGAATTTGCACCGATTACTGGGTGGAGAAAATTTCTTCTGAAGCTCAAGATGCTCATTGCGTCCCCTTTGGAGCGTGTCCCCAAGGGCAGTGTTCTAACAATGAAGTTGCGGGGCCGGATTTCTGATCAGCTAAGGAGTCCTTTCTCTCAAGGTCAAGGACTATCTCTACCTCGAATTTGTGAGAACTTCTTAAAAGCAGCATATGATCCTCGTATTTCTGGAATCTATCTCCATATTGATAATTTGAATTGCGGGTGGGGTAAAGTTGAAGAAATTCGAAGGCACATACTGAATTTCAAAAAATCAGGAAAATTTGTTGTGGCTTATGTCCCTTCATGTCGAGAAAAAGAATATTACATAGCATGTGCATGTGAAGAGATATACGCCCCTCCAAGTGCTTATATTTCATTGTTTGGCTTGACTGTTCAAGCCTCATTCCTTAGAGGTGTTTTAGATAACATAGGAGTTGAACCACAAGTTGAAAGGATTGGGAAATACAAAACTGCAGGAGATCAACTAACCCGTAGAACCATGTCTGAAGAAAATTGTGAGATGCTGACTTCATTGCTTGATAATATCTATACCAATTGGCTGGATAAAGTCTCTTCTTCAAAAGGAAAAAAGAGAGAAGACATTGAGAACTTCATAAATGAAGGAGTCTATCAAGTGGACAGGCTGAAAGAAGAGGGCTTCATAACAAGCATAATGTACGACGATGAGGTTATTGCTGGTTTGAAGGAGAGACTCGGGGTGAAAAAAAATGAAAATCTGCCTATGGTGGATTACAGGAAATACTCTAGAGTTAGGAAATGGACTGTTGGAATATCAGGTGGTAAGGACCTGATAGCCATCATCCGAGCCTCAGGGAGCATTAGTCGTGTGAAGAGTCCATTAAGTGTGTCTAGATCGGGTATTATTGGCGAGCAGTTCGTTGAGAAGATTCGCCGTGTGAGAGAGTCAAGACAATTTAAAGCTGCTATTATCCGAATCGACAGTCCTGGAGGTGATGCCCTTGCTTCTGATTTGATGTGGAGGGAAATCAGACTTTTGGCTGCCTCAAAACCAGTCATTGCCTCATTGTCTGACGTGGCAGCAAGTGGAGGCTACTATATGGCAATGGGAGCAGGAACTATTGTTGCAGAAAGTCTTACCTTAACAGGTTCAATTGGAGTGGTCACAGGCAAATTTAACCTGGGGAAACTGTATGAGAAGATTGGCTTCAACAAAGAAATCATGTCGAGGGGAAAATATGCTGAGGTCCTTGCTGCTGAACATCGTCCTTTTAGACCTGATGAAGCAGAGCTATTTGCCAAGTCTGCACAACATGCTTATAAACAATTTCGAGATAAGGCAGCTTTTTCTAGATCAATGACTGCAGACAAGATGGAGGAGGTTGCGCAGGGGAGAGTTTGGACTGGTATAGATGCAGCTTCACATGGTTTGGTTGATGCGATTGGTGGAATCTCTCGAGCTATTGCCATAGCAAAATTGAAGGCCAATATACCTCAAGACAGACAGGTTACTCTTGTGGAGCTTTCTCGGCCTTCCCTACCAGAGATTGTTAGTGGCATAGGAAATACCCTTGTTGGAGTAGATAGAACATTGAAGGAATTGCTACAGGACTTGACATCTTCTGATGGAGTTCAAGCACGGATGGATGGAATCATGTTTGAGAGATTGGAAGGATATCCTTACCCCAACCCCATTTTGACATTAATGAAAGATTTCCTTAGTTCCCTATAG 2067 0.4335 MSKLVLHSSRFSSVRRCKTFVATLFSSSSTAPLSRFQCRFILSVPSHSRPLRPFQSHRYLSLCAFHSSSSFFDSKSKEELVGKESRPDGGINKQSGRIADEDYPSGDFEFAPITGWRKFLLKLKMLIASPLERVPKGSVLTMKLRGRISDQLRSPFSQGQGLSLPRICENFLKAAYDPRISGIYLHIDNLNCGWGKVEEIRRHILNFKKSGKFVVAYVPSCREKEYYIACACEEIYAPPSAYISLFGLTVQASFLRGVLDNIGVEPQVERIGKYKTAGDQLTRRTMSEENCEMLTSLLDNIYTNWLDKVSSSKGKKREDIENFINEGVYQVDRLKEEGFITSIMYDDEVIAGLKERLGVKKNENLPMVDYRKYSRVRKWTVGISGGKDLIAIIRASGSISRVKSPLSVSRSGIIGEQFVEKIRRVRESRQFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASLSDVAASGGYYMAMGAGTIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIMSRGKYAEVLAAEHRPFRPDEAELFAKSAQHAYKQFRDKAAFSRSMTADKMEEVAQGRVWTGIDAASHGLVDAIGGISRAIAIAKLKANIPQDRQVTLVELSRPSLPEIVSGIGNTLVGVDRTLKELLQDLTSSDGVQARMDGIMFERLEGYPYPNPILTLMKDFLSSL 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g0976 688 Gene3D - 534 658 - -
Glsi02g0976 688 Pfam Peptidase family S49 458 608 IPR002142 GO:0006508|GO:0008233
Glsi02g0976 688 Pfam Peptidase family S49 207 359 IPR002142 GO:0006508|GO:0008233
Glsi02g0976 688 NCBIfam signal peptide peptidase SppA 391 603 IPR004635 GO:0006508|GO:0008233
Glsi02g0976 688 CDD S49_SppA_67K_type 140 355 IPR047217 -
Glsi02g0976 688 SUPERFAMILY ClpP/crotonase 135 345 IPR029045 -
Glsi02g0976 688 Gene3D - 385 533 - -
Glsi02g0976 688 Gene3D - 137 375 - -
Glsi02g0976 688 PANTHER PROTEASE 4 95 687 - -
Glsi02g0976 688 CDD S49_Sppa_N_C 390 604 IPR047272 -
Glsi02g0976 688 SUPERFAMILY ClpP/crotonase 390 595 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g0976 Glsi-ChrGlsi02 6460722 6469752 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g0976 02 6460722 6469752 Glsi13g1043 13 28478339 28485946 CCT
Glsi02g0976 02 6460722 6469752 Glsi02g0976 02 6460722 6469752 ECH