Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0963 ATGAGCTGCACTAGAGGAGATTGGATGTGTAGTGCTTGCCAGCACATGAATTTCAAGAGGAGGGATGCATGCCAACGTTGTGGGTACCCCCAGTTTGGAGGGCCTGACCCATCAACTTACGGAAACAATAGGACTGAAGCATTGGCAGGGGACTGGTTTTGCACCGCCATAAGCTGTGGAGCTCACAACTATGCCCGCCGATCAAACTGCTTTAGATGTGGTGCACTGAAAGATGATTATACTAATGGATATGGGGGAAACATGGTGGGCTCTGGAGCATATGGATCTGGTGGTAGTTTCCCCCCTGGATGGAAGCCTGGCGATTGGATTTGCACAAGAATTGGCTGCGGAGTACATAATTACGCTAATAGGACAGAATGCTTCAACTGCAAAACACCGAAAGATATTGGTGAGAAAAGCTTAGTCCTGGGAACTTTTACTCCTTAA 447 0.4787 MSCTRGDWMCSACQHMNFKRRDACQRCGYPQFGGPDPSTYGNNRTEALAGDWFCTAISCGAHNYARRSNCFRCGALKDDYTNGYGGNMVGSGAYGSGGSFPPGWKPGDWICTRIGCGVHNYANRTECFNCKTPKDIGEKSLVLGTFTP 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0963 148 SUPERFAMILY Ran binding protein zinc finger-like 99 136 IPR036443 -
Glsi13g0963 148 ProSiteProfiles Zinc finger RanBP2 type profile. 105 136 IPR001876 -
Glsi13g0963 148 Gene3D - 101 136 - -
Glsi13g0963 148 Gene3D - 41 79 - -
Glsi13g0963 148 Gene3D - 2 35 - -
Glsi13g0963 148 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Glsi13g0963 148 SUPERFAMILY Ran binding protein zinc finger-like 4 33 IPR036443 -
Glsi13g0963 148 SUPERFAMILY Ran binding protein zinc finger-like 40 79 IPR036443 -
Glsi13g0963 148 PANTHER ZINC FINGER PROTEIN 44 137 - -
Glsi13g0963 148 Pfam Zn-finger in Ran binding protein and others 105 134 IPR001876 -
Glsi13g0963 148 Pfam Zn-finger in Ran binding protein and others 6 28 IPR001876 -
Glsi13g0963 148 Pfam Zn-finger in Ran binding protein and others 49 77 IPR001876 -
Glsi13g0963 148 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Glsi13g0963 148 SMART zf_4 107 133 IPR001876 -
Glsi13g0963 148 SMART zf_4 50 76 IPR001876 -
Glsi13g0963 148 SMART zf_4 6 30 IPR001876 -
Glsi13g0963 148 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Glsi13g0963 148 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Glsi13g0963 148 FunFam Ran-binding zinc finger protein 96 136 - -
Glsi13g0963 148 ProSitePatterns Zinc finger RanBP2-type signature. 109 130 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0963 Glsi-ChrGlsi13 27869310 27870608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0963 5 73 EF-hand Containing Proteins AT1G55040 30.435 2.08e-06 44.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi13g0963 13 27869310 27870608 Glsi02g1074 02 7196618 7197611 CCT