Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2159 ATGGAGAGACAAGTTTATTCGATTGAGAATGGTACCACATGCGAACACATGGTTGTAGATGCAAAGCTGCCGACCTCGGATCATGTCACCGACCACGAACCGCCCAAAGACTTGCAGATTTCGCAGGGCCTTCAACCAAACATTACATTACACGAAAACAAAATCCAACAAATTCTCGCACTGCTTAACGCGCCTCTGTTTCTCACAACAGGAATACGTTTCAATTCACATTTGTCGATTTCAGTTAGAAACGGTGGGACAATGGAGAAAAATTGGATTTTGAAATGGGTTCTGCTGGTGGGGATCATGGTGTGCTATGTTGAAGGGCTTGGGGTGAATTGGGGAACTCAGGCAACCCATAAGTTGCCTCCAGACACGGTGGTTCAGATGTTGAAGGACAATGGAATTCAGAAGGTGAAGCTTTTTGACGCAGATGAGTCTACCATGGATGCTCTGGCTGGGACTGGGATTGAAGTCATGGTTGCCATTCCGAATAATCAGCTTGCTGAGATGAACGACAATGATCGGGCCAAACAGTGGGTTCGGAAGAATGTTACCCGTCACAACTTCAAGGGAGGAGTTAATATCAAGTATGTGGCAGTTGGGAATGAGCCATTTTTGAAATCCTACAATAATTCATTCTTGAACGTCACCTTACCAGCACTGCAGAACATTCAAAATGCACTTAACGATGCTGGTGTTGGGGACTCCGTAAAGGCTACCGTGCCCTTAAATGCTGATGTGTACGGGTCTCCAGAGGATAACCCTGTACCCTCTGCTGGAAGATTTAGGGCTGATATCAGTGATCTTATGACCCAGATAGTCCAATTTCTGAACAAAAATGCTGCACCATTCACTGTGAACATTTACCCCTTCTTAAGTCTTTATGGGAATGACGACTTTCCCTTTGACTATGCCTTCTTCGATGGGGTAGCCAATCCGATAAACGATAATGGGACTCCATACACTAACGTTTTCGATGCAAACTTTGATACATTGGTTTCTGCTCTGAATGCAGCGGGGTATGGGAGCATGACCATTTTGGTAGGAGAAGTGGGGTGGCCTACGGATGGGGACAAGAATGCTAATTCAGGTAATGCCTTAAGATTTTATAATGGCCTTCTACCGAGGCTTGCAGCTAATAAAGGCACCCCACGCCGTCCTGGATATATTGAAGTTTATCTGTTTGGACTCATCGACGAGGATGCCAAGACCATTGCTCCAGGAAACTTTGAGCGCCACTGGGGAATTTTTAGGTATGACGGGCAGCCCAAGTTCTCGATGGACCTTTCTGGTCGGGGTCAAAACAAATTTCTCATCGGTGCACAGAATGTGAATTATCTTTCCCCGAAGTGGTGCATGTTCAATCCAGACGCCAAGGATCTTAGCAAACTTGCAGATAATATAAACTACGCTTGCACCTTTGGAGATTGCACAGCACTTGGATATGGCTCTTCTTGCAACATGTTGGATACTAATGGGAATGCCTCGTATGCGTTTAACATGTATTACCAGGTGCAGAATCAGGATGATATGGCCTGTGATTTTCAAGGTTTGGCCAAGATTTCTACCCAGAACATTTCACAAGGCAATTGCAATTTCATTATTCAGATAGCTCCTTCATCATCTTCTTCTTTGAGGTCCTCACTGGGAGCTTACGTATTCATCACACTAGTATTCATGATACTATTTTTGTAG 1698 0.4476 MERQVYSIENGTTCEHMVVDAKLPTSDHVTDHEPPKDLQISQGLQPNITLHENKIQQILALLNAPLFLTTGIRFNSHLSISVRNGGTMEKNWILKWVLLVGIMVCYVEGLGVNWGTQATHKLPPDTVVQMLKDNGIQKVKLFDADESTMDALAGTGIEVMVAIPNNQLAEMNDNDRAKQWVRKNVTRHNFKGGVNIKYVAVGNEPFLKSYNNSFLNVTLPALQNIQNALNDAGVGDSVKATVPLNADVYGSPEDNPVPSAGRFRADISDLMTQIVQFLNKNAAPFTVNIYPFLSLYGNDDFPFDYAFFDGVANPINDNGTPYTNVFDANFDTLVSALNAAGYGSMTILVGEVGWPTDGDKNANSGNALRFYNGLLPRLAANKGTPRRPGYIEVYLFGLIDEDAKTIAPGNFERHWGIFRYDGQPKFSMDLSGRGQNKFLIGAQNVNYLSPKWCMFNPDAKDLSKLADNINYACTFGDCTALGYGSSCNMLDTNGNASYAFNMYYQVQNQDDMACDFQGLAKISTQNISQGNCNFIIQIAPSSSSSLRSSLGAYVFITLVFMILFL 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2159 565 ProSitePatterns Glycosyl hydrolases family 17 signature. 345 358 IPR000490 GO:0004553|GO:0005975
Glsi12g2159 565 Pfam X8 domain 451 520 IPR012946 -
Glsi12g2159 565 SUPERFAMILY (Trans)glycosidases 110 429 IPR017853 -
Glsi12g2159 565 FunFam Glucan endo-1,3-beta-glucosidase 5 109 436 - -
Glsi12g2159 565 Gene3D Glycosidases 109 437 - -
Glsi12g2159 565 FunFam Glucan endo-1,3-beta-glucosidase 8 447 543 - -
Glsi12g2159 565 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 103 522 IPR044965 GO:0004553|GO:0005975
Glsi12g2159 565 SMART X8_cls 451 534 IPR012946 -
Glsi12g2159 565 Gene3D - 447 546 - -
Glsi12g2159 565 Pfam Glycosyl hydrolases family 17 110 429 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2159 Glsi-ChrGlsi12 36435932 36439479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2159 93 562 Miscellaneous Gene Families AT1G64760 74.255 0.0 710
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2159 12 36435932 36439479 Glsi11g1600 11 10026704 10029366 CCT
Glsi12g2159 12 36435932 36439479 Glsi12g2159 12 36435932 36439479 ECH