Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2157 ATGGGTGCAAGTCGAAAGCTTCAGGGTGAGATAGATCGTGTCCTGAAGAAGGTCCAAGAAGGCGTTGAAGTCTTCGATAGTATCTGGAACAAGGTCTACGATACAGACAATGCAAACCAGAAGGAGAAATTTGAGGCGGACCTGAAAAAGGAGATTAAGAAGCTCCAGAGGTACAGAGACCAGATTAAGACTTGGATTCAGTCCAGCGAGATCAAGGATAAGAAGGTTAGTGCCTCTTATGAGCAGGCTCTAGTGGATGCTCGCAAGCTCATTGAGCGTGAAATGGAAAGATTTAAGATTTGTGAAAAGGAAACTAAGACCAAAGCATTCTCCAAAGAAGGCTTGGGCCAACAGCCTAAAACTGATCCTAAGGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGGTTGGAGAGTTAGAATCTCAGATTGATAGCTTTGAAGCTGAGCTTGAAGGGCTTTCTGTCAAAAAAGGAAAGAGCAGGCCTCCCAGATTGACACATCTAGAGACATCAATTACTCGACACAAGGCTCATATAAAGAAATGTGAATTACTCTTGAGGCTACTGGATAACGATGAATTAAGTCCAGAGCAGGTTAATGATGTAAAAGATTTCTTGGATGATTATGTAGAGCGTAATCAGGAGGATTTTGATGAATTCAGTGATGTTGATGAGCTATACAGTTCATTACCTTTAGACAAGGTGGAGTCTCTTGAAGATCTTGTCACAATTGGTCCCCCTGCTCTTAGTAAGAGTGCCCCTGGTCTTACCTTGAAGACTTCTTCGGCACCATCAGCAACAGCTTCACAAACATCTGAGCAAGCTGATGATACAGCTTCCCAGGATAGCAATTCAGATAATGTTGTGAGAACACCACCTTCTAAAAGTAGTGGAATCAGTTCTGCTATTTCAACACCAGCTGGGAACCATGCTACTCCTGTTTCGTTGAATGTTTCAGCTCATAACTTGTCCAGTGCACCAGCTGCTGCATCAGTCCTCCCTGTTACAAATACTGTTCGGAGTGCTTTGGAGAATACTGGTACTGCTAATTCTTCATCTTCTGGAAATCAGTCTATGTCTATAAAAGAAGAAGAGGTTAATAGCTTCCCTGGCCGGAGAGCATCTCCATCGCTTTCTGATGCTGCACATGCAAGAAGCATCGGTAGAAACAGCCTGTCAAATCAAGTAACATCTAGTATTCCTCTTGGATCTGGCAACATGGTTTCCAGTAATGGGGCCCTTGGTTCAGTTCCGTCAGCCTCTGAAATAACTAAGAGAAACATATTGGGAGCTGATGATAGACTTGGAAGTAGTGGGATGGTGCAGCCTCTTTTATCCCCCCTAAGTAACAGAATGATCTTGCCTCAGGCTGTGAAGGCTAATGATGGAACTAGCTCAGTTGACTCTAGTAATGTTAATGAGGCTGCGGCTGTATCTGGGAGAGTTTTTTCCCCTTCTGTGGTTCCTGGAATGCAATGGCGACCTGGAAGTCCTTTCCAGAACCAGAATGAGACGGGTCAGCTTCGCGGAAGAACTGAAATAGCTCCTGATCAGAGAGAGAAATTTCTGCAGAAGTTTCAGCAAGTGCAGCAACAAGGGCACAGTACCCTTCTTGGTATGCCTTCTCTTTCTGGAGCAAATCATAAGCAGTTTTCTTCTCAACAGCAGAATCCTCTCTTACAGCAGGCACCAGGTCTCAGTAGTATTTCATCTACATCATTACAGCAGCCACCCAATTCTATCCTTTCTCCGTCTAGCCAACAACAGCCATTGATGTCAGGTGTTTCCAAAGATTCTGATATTGGCAATTCTAAAGTTGAAGAACAGCAGCAATTGCAGAATTTTCCTGATGATTCAGTGACTGAATCTGTTGCTAGTACTGGGCTTGGCAAGAATCTCCTAAATGAAGATGATTTGAAATCCACTTATGCTGTAGATTCTCCTCATGCAGGAGGATCTGGCTCTCTTCAAGAGCCTGCTCAGAGTTCCAGGGATACTGATCTTTCCCCCGGCCAACCTTTACAACCCAATCAACCTTCTGGTAACCTTGGTGTCATTGGAAGAAGAAGCGTTGCTGACCTTGGAGCCATTGGTGATAATTTTGGTGGAATGAGTGTTAATTCTGGTGGTGTGCGTGATCAATTATTTAATTTGCACATGCTTGAGGCGGCTTACTACAAACTTCCGCAACCTAAAGACTCAGAACGTCCAAGGACTTATACTCCTAGGCAGCCAACAATAACACCTCCTAGTTATCCTCAAGTGCAGGCACCTATTGTCAGTAATCCTGCCTTTTGGGAGAGAGTAGGTCTTGAACCATATGGCACTGATACCCTGTTCTTCGCATTTTATTATCAACAGAACACTTATCAACAATATTTGGCTGCAAAAGAACTAAAGAAGCAGTCTTGGAGATATCACAGAAAGTATAACACATGGTTTCAGCGACATGAAGAGCCAAAAGTTGCTACAGATGAATATGAGCAGGGAACATATGTTTACTTCGATTTTCATATTGCAAATGATGACCTGCAACATGGGTGGTGTCAAAGAATCAAGACCGAGTTCACTTTTGAGTATAATTATCTTGAAGATGAGCTTATTGTATAG 2619 0.433 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDSFEAELEGLSVKKGKSRPPRLTHLETSITRHKAHIKKCELLLRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVESLEDLVTIGPPALSKSAPGLTLKTSSAPSATASQTSEQADDTASQDSNSDNVVRTPPSKSSGISSAISTPAGNHATPVSLNVSAHNLSSAPAAASVLPVTNTVRSALENTGTANSSSSGNQSMSIKEEEVNSFPGRRASPSLSDAAHARSIGRNSLSNQVTSSIPLGSGNMVSSNGALGSVPSASEITKRNILGADDRLGSSGMVQPLLSPLSNRMILPQAVKANDGTSSVDSSNVNEAAAVSGRVFSPSVVPGMQWRPGSPFQNQNETGQLRGRTEIAPDQREKFLQKFQQVQQQGHSTLLGMPSLSGANHKQFSSQQQNPLLQQAPGLSSISSTSLQQPPNSILSPSSQQQPLMSGVSKDSDIGNSKVEEQQQLQNFPDDSVTESVASTGLGKNLLNEDDLKSTYAVDSPHAGGSGSLQEPAQSSRDTDLSPGQPLQPNQPSGNLGVIGRRSVADLGAIGDNFGGMSVNSGGVRDQLFNLHMLEAAYYKLPQPKDSERPRTYTPRQPTITPPSYPQVQAPIVSNPAFWERVGLEPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2157 872 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Glsi12g2157 872 MobiDBLite consensus disorder prediction 646 688 - -
Glsi12g2157 872 Pfam NOT2 / NOT3 / NOT5 family 728 866 IPR007282 GO:0006355
Glsi12g2157 872 MobiDBLite consensus disorder prediction 252 309 - -
Glsi12g2157 872 FunFam CCR4-NOT transcription complex subunit 3 isoform X1 712 867 - -
Glsi12g2157 872 Coils Coil 41 61 - -
Glsi12g2157 872 Gene3D - 712 867 IPR038635 -
Glsi12g2157 872 MobiDBLite consensus disorder prediction 732 757 - -
Glsi12g2157 872 MobiDBLite consensus disorder prediction 110 131 - -
Glsi12g2157 872 MobiDBLite consensus disorder prediction 348 367 - -
Glsi12g2157 872 PANTHER CCR4 NOT-RELATED 24 869 IPR040168 GO:0030015
Glsi12g2157 872 MobiDBLite consensus disorder prediction 657 687 - -
Glsi12g2157 872 PIRSF NOT_su_3_5 1 872 IPR012270 GO:0006355|GO:0030015
Glsi12g2157 872 Coils Coil 139 159 - -
Glsi12g2157 872 MobiDBLite consensus disorder prediction 540 604 - -
Glsi12g2157 872 MobiDBLite consensus disorder prediction 348 398 - -
Glsi12g2157 872 MobiDBLite consensus disorder prediction 491 511 - -
Glsi12g2157 872 MobiDBLite consensus disorder prediction 257 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2157 Glsi-ChrGlsi12 36422445 36432420 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2157 12 36422445 36432420 Glsi11g1601 11 10033144 10043849 CCT
Glsi12g2157 12 36422445 36432420 Glsi12g2157 12 36422445 36432420 ECH