Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g0687 ATGATGAACTTCGCAGAACAACTTTTCATTTCAGAAGAGAAACAAGTTCAGATGAATGGTTCCTGGGTACCTGTCACCCCTGAGAAGCCAATTCAAATAAGATCAGATATAATATCAGCAGACTGGCAGGGAAACCAAATGGGAGGAGAAAATTTGAAAGAGTTAACTGTACCTGGAAGTGGTTACATGAAAGAGACGCTGCAGTATAATGGGCCAGATCAAAATATCCATTCAATAGGACAAACTACTGAGTACAATTTTGATGGAGGCTCTGCCGAGAGAAACAAGGTCATAAATCACATTGCCAGCTCCTACAAAAAGGCCTTGCACTTTGACAGCAATAGATTGAACTTGAATACTATCGAACTTCTCAGGAAGAATGCAACTAATATTGCTGCTGCCAACAGTTTAGGCGAAAGCATAAGCATGGCAGCAAGAACACCACTTCTACCAACATTTCATCTTCAGGCTAGCAGTAACGGGAGAGATTCCTGGGCAGGTGGTTTCATGTTCAACCAAAGCAATAACTATACAGCTTCAGAAACAGTGTACACAGACACAAATAGACCTCTGATTCCAAGTAGGAATTCTGAATTTGATGGCAGCAACTCACACAGCTTTCCCAACAATGACACTCACTGCACAGTCTCAAACCTGCTGAAGAGTTGCTTATCTGAGACACCCTATGGTGGTGTTTACATACCTTGCAGACCTAAGTACGATCTGAACTCTGCACCAGTAACAGAAGCTGATGCTGTCTTTAGTTTCACCAACTCCTTCCTATCAGTACCAGAAACAATGGATCAAATCAGTAAGTATGCAGACAATCAGCTTTGTACACTAACAGAGTACACAATAGCTGAAAGCCCAACTCGGGAAAAAGACAAGCAAGAAAACTTGGTTGCATCCACAGAAAATGAATATCAGGAATATTGTGATGGACTTCTACAGAATATTGTAGATTCATCATCTGCAGCAATTTCTACACCATATAGCAACAATAAGGTTTCTGAAAGTGACGATTTTGGCAGCGGAAGTGGCCTGGGTTTTGATCTGAACAAGACACCTGAGCAGAAAGCACCTAAACGAAGAAAACATAGGCCAAAGGTAATTGTAGAAGGCAAGCCCAAAAGAACACCAAATCCAGCAACTCAAAAGAAGAGAGAGTCCAAGGATAATAAACCCCAAAAGAGCAAGTATGTAAGGAAAAATGTCCCAAAAGAAGCAGCAATACCACAGGCTGATGTTATAGAGACTTTAGATTCTACAACTGCTACTAGAAAATCTTGCAAGAAAGCTCTAAACTTTGCCCTAGAAAAGAGTAAATATGAAGGCCATGACAAAATAATTTATCAGCAGGAGATTCAGCATAGAAATGAGAAAGCTTTTAACATCTCTTCTGACTATCAGGTTGCAGAGTTGCTCAGTGGAGCAAATATAAGGTATGCTACAAACTCAACCTTGCTGATCAGTGAGCAGGATGGATTTACAGTGGAAAACCAGCAACCCAGAAACACAGACGGTGTTACTCTTTTATTGAATCAAAAGCTAAATGAAACATTCTTGCCAGAAAGGCAAGCAGCTGTACCCTTGTCAGCAACTACAAAAGAAAATCAGATTACAAATTTACCAGACGCAAAGGAAGGTCTAGCTCTAGGAAATGCTGGTTTGTGCCAGGAAAGAAATAATGGATTCTTGCAGCAATGCATTCACGCAGATGGGTATGACAATCTTCTCTTTCCATCAGAGACATCTTTTGAGAACCCTCAGAAGAACAAACTACCACTGTCACAGAATAACCTTTGTTTGGTGCCAGACAGTCTGCCCAACACCACTGAAGGAAGCGGTTCCAAGAGAAAACATTGCCACCCCATTGAGAACCAACATGTCTCAGCCAATCCACTTGATTCTTCCTCATTGCACCAAGAGATTTTCCAAGTGGATGAATATAATGTCACACCTCTAGACAAAGATTTATATAAAACTCACAAAAGGAAGAAAACTAAAAATAGACTTGGTTTACAAAAAGTAAGAATAAAAGGAAAAGATGAATCTCAATCACAACTCAACAATGATATAACAAACTACTGTATTGAAGGTAAAATATTTGAAGAGGAGACAAACACCAAAGCCACCAAACTTGCAGGTGATGGCTTTGCTAGCTCAGGTGCACCACACCAGATATATCTGACACAAATAGATGAGATAATTTGTCAGCTAAAAGATCAAAACCTCAGGGAGAGCAACACTTCAGGAATGGATGGACAAAATGCACTTGTCCTATATAAGGGAGAAGGTTCAGTTGTCCCATATGAAGGATTTGAATTTGCAAAGAAACGTAAACCACGGCCTAAAGTGGATCTAGACCCAGAAACAGAGAGAACCTGGAAACTATTGATGGGCAAGGAAGGAAGCGAAGGCCTTGAAGGAACTGACAAGGAAAAGGAGAAGTGGTGGGAAGAGGAAAGAAAAGTTTTTCACGGACGAGCCAATTCCTTCATTGCACGAATGCATCTTGTTCAAGGTGATAGACGTTTTTCACAGTGGAAAGGATCAGTAGTTGACTCAGTGATAGGAGTTTTCCTTACTCAGAATGTTTCAGACCATCTTTCAAGCTCAGCCTTCATGTCTCTAGCAGCAAGGTTTCCTCATAAGTCAGCAAGTAACAAGAGATCATGTTATATTGTTGGCACAGACAAACTGGTCAAACAACCAGAAGTCTGCATTGTGAATCGAGATGAGACAATAATGTCATACAGAAGATTAAGTCAACCAACCTATGATCAAGGCTTAGTGCCACGCCATGATATAGGAGAGCTTTGGAGAGAGAGCGAGGTCTCAATAATAAGAAGCCTAAACATGCCAAATAATCAGAGCTCAGAAGAAGAAATCATATCGTCACAAGATTCTCTTGATTCCTCAATCACTGAAGCCACCAGAGGAATCAGATCCTGCTCAGGTTCCAATTCAGAAGCAGAAGGCCCTACCACTGGGTATGAACCCAGAAAGACTCAACTTTTAAATTCAACAAATTCTTTACAGGTAGGAAAGACCACAATGTTCCAGGAATTTTACAATAGTGTAAATGGAGTGTCACTGTTCAATGAGAGAACCAAAGACGGACAGGTGCTACATGCAGAATATGCCAAACAAAAGTCAAGATCAGGCAAAAATGATAGTCTGATTTCCCATGCTGAATTTAGTCATCCAATCAATTTTGGAAATCCACAAAAGCAAGTGCCTGCAGTTCCTTCAACTGACTATGAGTTACATGACTCAGAAGCACATGGGATGATGAATACTTTTCAAATGCATGGTGGAGATTCTTCTCAGCATGAAACTATTTCCATACTCAGTAAGTTACAAGGCATGAATTATAGGAGAGTCAGCATCCAGGAAGAAGGAAGTATAGATAAATCCACAGAGAAGCAATATGGGCCATTAGGGTCTCAAGAGTTACCAACAAATAACCCATATGAACCATTAAGCACGCATCTTGTCCACCTACAAAATAATTTTCAATCAGGATCCCATACAAATCATCATCAGCCTTTGTCTAACCATTATCATGCAGGTAAGAAAATCTTACAACCAAAAGGCATGCCATTTATAGAAGCACCATGTACTTCTCAGAAATTGGGTAGGGTGCAGGATGACACAGTGCAGGATTCCCACAACATTCCTAATCACACAGAAGGGTTTCATTCTGAAAACAGGATGTCAACAGTAAACAGGCAAGCACACTCAGTTGATATCACTGCTGAAACACATCCACAGGAACTTTATTCTTCTGGCACTACATATAAAGAGAGCAAACTCAAGGTTTCAAAAGCCAAGACAGTAAAGGCTGAGACAGAGAAAAAGAATGTTGTTGATTGGGACAACTTAAGAAAGCAGGCACAGGCAAATGGGAGAAAGAAAGAAAGGAGCAAAGAGACAATGGATTCACTGGATTATGAAGCAGTGAGATGTGCCTCGGTTAAAGAGATCTCCGAAGCTATCAAAGAACGAGGGATGAACAACATGCTAGCAGAACGAATCAAGGAATTTCTGAACAGATTAGTTAGAGAACATGAAAGAATTGATCTTGAGTGGTTAAGAGATTTCCCCCCTGATAAAGCGAAGGATTATCTGCTAAGCATACGAGGATTGGGGCTAAAAAGTGTGGAGTGTGTACGGCTTCTGACACTTCACCATCTTGCTTTCCCAGTTGACACAAATGTTGGAAGGATAGCAGTTAGACTTGGATGGGTCCCTCTTCAACCACTTCCTGAATCACTTCAGTTACACCTCCTTGAATTGTACCCAGTGTTGGAGTCAATTCAGAAGTATCTCTGGCCCAGATTGTGCAAACTTGATCAGAGAACCTTGTATGAGCTGCACTACCAGATGATTACCTTTGGAAAGGTTTTCTGCACGAAGAGTAAACCAAATTGCAATGCATGTCCAATGCGGGCAGAGTGCAGACACTTTGCAAGCGCTTTTGCAAGCTCTGCTTGCTTTACTTTTCAGATCACTAATCCCATTTTTTCTGTTCAAGATTCCAGTACTTCACGATTTGGTTACTGCTGTAGTCAGTATAAACAAATGATTGCAAATCTGAAATGCGCACGGCTTGCATTGCCTGGACCAGAAGAGAAACACATTATAAGTATCCCTGTTCCAATTGCAACTGAGAGAAACCCTGCTCTCAATATGAATCCGGTGTTACTACCTCTCCCTGACAACAACTTGCTCAAAGAAGCAAGTTTTCAAACTGGGAAGTGTGACTGTGAGCCAATCATTGAAGTACCAGCAACACCAGAGCAAGAGTGCCCAAACACAGAGGCATTGGAAAGTGACATCGAGGACTCATTCTGGGAGGATCCTGATGAAATTCCAATTATCAAGCTCAATATTGAAGAGTTGACTACAAATATACAAAACTACATGCAAGAAAACATGGAACTCCTAGAAGGAGACATGTCTAAGGCACTCGTTGCTTTGAATCCAGAGACAGCTTCTATTCCTACACCAAAACTGAAGAATGTGAGTCGGCTACGGACAGAACACCAAGTATATGAACTTCCAGATTCTCATCCTCTCCTGGAAAAGATGGATAATCGTGAACCTGATGACCCAAGCCCATATCTTCTTGCAATATGGACACCAGGTGAAACTGCAAATTCCATTGAGCCACCAGAAAGAAGGTGCATATCCCTAGACTCAAACAATCTGTGCAATGACAAGACATGCCTTTCATGCAATAGCATTAGAGAAGCTAATTCACAAACAGTCAGAGGGACACTCCTGGTATTTGCAGACCATGTGTCCAGCATTCAACCTCTTGATGTCCCTAGGACATGGATATGGAACTTGCCGAGGAGGACTGTATACTTTGGAACTTCTGTATCTAGCATTTTCAAAGGGGATTTGACCAAGAAGCACGTGCACCCCGCCCCCTTATGGCCAGATTGCACTTTCCAGCAAGTTGAACTGGACCAGACCACAGACCAGTTCCTGGTTCAGCTGGTCCAGTCCAGTTCTGACAACATTGTTATTAACCACTTTGTCAGTATTATAGGATTGTAA 5571 0.4137 MMNFAEQLFISEEKQVQMNGSWVPVTPEKPIQIRSDIISADWQGNQMGGENLKELTVPGSGYMKETLQYNGPDQNIHSIGQTTEYNFDGGSAERNKVINHIASSYKKALHFDSNRLNLNTIELLRKNATNIAAANSLGESISMAARTPLLPTFHLQASSNGRDSWAGGFMFNQSNNYTASETVYTDTNRPLIPSRNSEFDGSNSHSFPNNDTHCTVSNLLKSCLSETPYGGVYIPCRPKYDLNSAPVTEADAVFSFTNSFLSVPETMDQISKYADNQLCTLTEYTIAESPTREKDKQENLVASTENEYQEYCDGLLQNIVDSSSAAISTPYSNNKVSESDDFGSGSGLGFDLNKTPEQKAPKRRKHRPKVIVEGKPKRTPNPATQKKRESKDNKPQKSKYVRKNVPKEAAIPQADVIETLDSTTATRKSCKKALNFALEKSKYEGHDKIIYQQEIQHRNEKAFNISSDYQVAELLSGANIRYATNSTLLISEQDGFTVENQQPRNTDGVTLLLNQKLNETFLPERQAAVPLSATTKENQITNLPDAKEGLALGNAGLCQERNNGFLQQCIHADGYDNLLFPSETSFENPQKNKLPLSQNNLCLVPDSLPNTTEGSGSKRKHCHPIENQHVSANPLDSSSLHQEIFQVDEYNVTPLDKDLYKTHKRKKTKNRLGLQKVRIKGKDESQSQLNNDITNYCIEGKIFEEETNTKATKLAGDGFASSGAPHQIYLTQIDEIICQLKDQNLRESNTSGMDGQNALVLYKGEGSVVPYEGFEFAKKRKPRPKVDLDPETERTWKLLMGKEGSEGLEGTDKEKEKWWEEERKVFHGRANSFIARMHLVQGDRRFSQWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPHKSASNKRSCYIVGTDKLVKQPEVCIVNRDETIMSYRRLSQPTYDQGLVPRHDIGELWRESEVSIIRSLNMPNNQSSEEEIISSQDSLDSSITEATRGIRSCSGSNSEAEGPTTGYEPRKTQLLNSTNSLQVGKTTMFQEFYNSVNGVSLFNERTKDGQVLHAEYAKQKSRSGKNDSLISHAEFSHPINFGNPQKQVPAVPSTDYELHDSEAHGMMNTFQMHGGDSSQHETISILSKLQGMNYRRVSIQEEGSIDKSTEKQYGPLGSQELPTNNPYEPLSTHLVHLQNNFQSGSHTNHHQPLSNHYHAGKKILQPKGMPFIEAPCTSQKLGRVQDDTVQDSHNIPNHTEGFHSENRMSTVNRQAHSVDITAETHPQELYSSGTTYKESKLKVSKAKTVKAETEKKNVVDWDNLRKQAQANGRKKERSKETMDSLDYEAVRCASVKEISEAIKERGMNNMLAERIKEFLNRLVREHERIDLEWLRDFPPDKAKDYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQMITFGKVFCTKSKPNCNACPMRAECRHFASAFASSACFTFQITNPIFSVQDSSTSRFGYCCSQYKQMIANLKCARLALPGPEEKHIISIPVPIATERNPALNMNPVLLPLPDNNLLKEASFQTGKCDCEPIIEVPATPEQECPNTEALESDIEDSFWEDPDEIPIIKLNIEELTTNIQNYMQENMELLEGDMSKALVALNPETASIPTPKLKNVSRLRTEHQVYELPDSHPLLEKMDNREPDDPSPYLLAIWTPGETANSIEPPERRCISLDSNNLCNDKTCLSCNSIREANSQTVRGTLLVFADHVSSIQPLDVPRTWIWNLPRRTVYFGTSVSSIFKGDLTKKHVHPAPLWPDCTFQQVELDQTTDQFLVQLVQSSSDNIVINHFVSIIGL 1856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g0687 1856 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 285 1803 IPR044811 GO:0019104|GO:0035514|GO:0080111
Glsi12g0687 1856 FunFam DNA glycosylase/AP lyase ROS1 1392 1500 - -
Glsi12g0687 1856 Pfam Permuted single zf-CXXC unit 1727 1758 IPR028924 -
Glsi12g0687 1856 SMART endo3end 1308 1470 IPR003265 GO:0006284
Glsi12g0687 1856 Pfam RRM in Demeter 1765 1806 IPR028925 -
Glsi12g0687 1856 SUPERFAMILY DNA-glycosylase 828 1493 IPR011257 GO:0003824|GO:0006281
Glsi12g0687 1856 SMART ccc3 1471 1491 IPR003651 GO:0051539
Glsi12g0687 1856 MobiDBLite consensus disorder prediction 981 1003 - -
Glsi12g0687 1856 Gene3D - 1370 1498 IPR023170 -
Glsi12g0687 1856 MobiDBLite consensus disorder prediction 380 403 - -
Glsi12g0687 1856 MobiDBLite consensus disorder prediction 330 403 - -
Glsi12g0687 1856 Coils Coil 1633 1653 - -
Glsi12g0687 1856 CDD ENDO3c 1320 1436 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g0687 Glsi-ChrGlsi12 23379765 23392280 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g0687 12 23379765 23392280 Glsi11g1075 11 6744990 6754615 CCT
Glsi12g0687 12 23379765 23392280 Glsi12g0687 12 23379765 23392280 ECH