Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1075 ATGGAAGTTGGAGAAGTGAGCAGAAAGGAGCTACAAGAACAGGTTTCTTGGATTCCCACTACCCCTGTAAAGCCCATTCTTCCACGATCAGTGCCGATCTGTTCGCCTAAAGAGGGAAACCAGCTGGACCAGACAAATTGCTCGAGAACAAGCTCATGTTGTATTTCAAGCAATGACTCTGTGGTTGCATGTTTTGAATCATCACCTGGCGCAGAAATAAAAAGCAGTCCGCAAGACTGGGCAGCACCTGCCGCAACAGTAACAAACGTTGCCGTCAACAATGTGGGAACTTGTGTCCAGCCATCCTTTGACAACCTTTCCATCTGGAATAATGTTCGCTTTTCCGACCTATTGGCTCTGGCAGATGCTGCGTCGGCACACACTAATGCAACACATCTAGGCAATGGAATGAAGATTCCAATTATTCCTACTTTGAAATCACAGTTCAAGGGCGACCCAGTAGCCAACCCCACCAGCACGTTCCTCAGTCACCACAATCTCTCTACTAATCAAATCACCTCCAGTACCATTTATGGCAATCCTCAAGAACCTCAGGGTACACCATGCTCTGCTTGCTGTAGCAAAACCATTTCACAATTTGCACCACCTACCCCAGACAAGGCCATCGGAGCACAAGGCAGGCAAATTGCAGGAATGCAGATAAATATGGAAGAGAAGTATCAAGGGGAAGAGGAGACAACTCTCCTAGCCACAAAGCTTGACGTTAGTGAAATTCCACACAATCAAGAACTCTGTGACCTAGTTATGGAGTCATCATTTGCTGCTGTTTCTATGCCATTCAAGGAGAATCACAACCCAGACAAGGAAGGCAGCCATGTTATCCCGAAGCCTTGCCAATCAAAAGAAAACCAAAATGGCAAGAGAAAGTATGTGAGACGGAAAGGATTAAACAGTACTTCTACAACTCCTCCAACAGAAGTGACAGGAGAATTCACTGAGCTAATGATGCCTGAATTTAACAAAAAGTCATGTAGAAAGTCCTTAAATTTCGACATAGAAGAGCAATCAAGAGATGAAAACTCAGCTTGCAGAGAAAATGCGACAGTGCATCTACGCAAAGGGATTGGTGTGAGCATTGCGGAAATGCATGTAGGCTTTGCCTGTGATCTAAACTTTTCAATGAAGCAGGGACTAAATGATTACAAGTCATTACCAGAAGACACACAAGCTCCCAGTATGTCTCTTTTAAAAAGCAACTCTCCAGGTACAAAGTTGAATGCCCACTCTGTAAAGAACAATAGCAAAAGAAAGAGCCAGGTGACATGTCAGGATGGACAACGAAACAATGCAAAAATGACATCAAAATCAAGAAGGCCATCAAGTCCAAATTATTCCAACAGCAATAACAGTGGAATTTTGACCACTGGATTTCAAATGGGTGGTTCCAAGAGAAAGCATTTCAGTGATATTGAACATGCAGATACCAGCAGCATTAATCTGATTGGGGTACAATATAATGGATTACAAGTATACCAGGCGATGTGTAGGGATCAATTTCCAAATGTTAGTAAGAAAAGGAAAAGTGGAAAGGGAAAATTTTCTAACACGTCAAATTCTGACAGACAATCATTTAATGACACAGGAGCACCACAAACATGCAATGAGCCCTTAGTTGCAGAGAAGCATACATCACTCACAAAAAAGGAGCGGGCCATTAAAAATATTCTTGCCAGTTCAACATATTCTAGCACAAATGAAGCCCAAGTGCACCATCAATTTGTATTGGACGCATTAACAGAGCAATTTAGACACCTACAAATAAATAGTGAAGCCAGAGACCAGGCATTACATGAGCAGAATACACTTATCCCTTATAACCAGCAAAATCAAAAGAACAAAGCCCTTGTCCATGGAGGGGGCATCATCATTCCCCTGGAGAGTGCATTTGAACACATCAGAAAACGAACACGGCCTAAAGTTGAACTTGATGAGGAGACTAATAGAGTGTGGCAGCTTTTGTTGTTAGATATAAACAGTCACGGAGTTGATGGAACAGATGAAGAAAAGGCTAAATGGTGGGAAGAAGAACGAAGAGTGTTCCGTGGACGAGCAGACTCATTTATTGCACGGATGCATCTTGTGCAAGGAGATAGACGTTTTTCTCAATGGAAAGGATCCGTTGTGGATTCAGCAATTGGAGTTTTCCTCACTCAAAATGTCTCAGACCATCTTTCAAGTTCTGCCTTCATGTCACTTGCTGCTCGATTTCCGCTAAAGTCTAGCAGCAATTGCAAAACATACCACAAGGAAGGCACAAGTTTGGTAGTCAGCAAGCCACAAGTGCACATTGTGGAACCAGAAGAGAATACAAAGTATGATCAGAATTCTATGACAATAGACATCATTGAGCGTTCTGAAGAAACAGAAGCTGTCAACAGCAATGATTCCAGCAGAACCACCTGTACTGTAATTTGTGAACCCCAGTGTTCAATGTTGTGCGGACCTACTGACACCATCACTGGGGAAGGCCAAGAAACAAGTTATGGGGGAGTAAGGGAAGAGTTAAATGACAAAGTTTCGTCCCAATACTCTGTCATTTCATCTCAAATATCGGGAAATTTTTCAACTGATCAAAATCTTGAGAAGATAGGGTCATGCTCAGATAGCAACTCAGAAGTAGAGGACTTGCCAAGCACAGCCAAGTACAACATCTTTGATAACATCACTTCTTTCACAAAGCTTTTAGAAATGGCCAGTTCAACCATGTTACATGAAGTTAACAGTCAAGGAAGCAAGTCAACTGAGAACTTGAAGGATGCATATGATCAATCTATAGGTATGAAGCATGACAATCAAACAGAAAACTTGGAAATATCAGATGTAATTCAAGGATCCTTAGAAGCTTCAATCATCACTTCCTGCGAACATACTTTGAAAATGACTCCCAACTCAGGATTTGACATTCACTGCTTTGACACTTTCAAAAGAGAATCCATATGTGGCGTCTCAAAGAGTAAAGATGAGAATGATATGGACAATCCAAGCTTGCAAACAACAGAAAGTCCAGCTGCAATTACCCATTCTCAAAGCATGTTAGCACAGCTCCATCTTCAGGATCAAAGCAATAACATGCAGCAAAATTTGTTTTGTAGTTCTGGAAAAACTCAAAATGTAATGCAGAAAGCAAGGGATTTAGATTCTGGTGACCAGAACTATGCAGTGTGGAATGAACCCCTAGAGAGAAATGCTGCCCCTACAAGACCAAAGAGCAGGAGGCTTGGAAAGAAAAAAAAGGATAATATTAACTGGGATAATTTAAGAAAACAAGCACTAGCTAAGACAGGGAAAAGAGAAAGGACGGCAAACACCATGGACTCTTTAGACTGGGATGCTGTAAGATGTGCTGATGTCAATGAAATTGCTGATGCCATCAAAGACCGGGGAATGAATAATGTTCTTGCAGAACGCATCAAGAATTTTCTCAATCGACTTGTTGAAGAACATGGAGACGTTGATCTTGAGTGGTTGAGGGAAGTTCCACCTGACCAAGCCAAAGAATACTTGCTAAGCATAAGGGGGTTGGGGCTGAAAAGTGTGGAGTGTGTGCGGCTGTTAACACTGCACCATCTTGCTTTCCCAGTGGACACAAATGTTGGCCGTATAGCAGTACGATTGGGATGGGTACCCCTCCAGCCACTGCCAGAGTCACTACAGTTGCATCTTCTAGAAATGTACCCAGTGTTGGAATCCATACAAAAATATCTCTGGCCCCGACTCTGCAAGCTGGAACAAAGAACATTGTATGAGCTGCATTACCAGATGATTACATTTGGCAAGGTCTTCTGTACAAAAAGCAAACCTAATTGTAATGCATGCCCAATGAGAGGAGAATGTAGACACTTTGCAAGTGCATTTGCAAGTGCAAGGCTTGCCCTGCCAGGACCAGAGCAGAATAGCATAGTTAGCACCGCTGGAAACAATGCAACTGATCAGAATCGGTTTATAATTGTCAGTCCGTTGTCTTTGCCTCTCCCTGGACACACAAACCAAGCAGAAGAAATTCAACAAACAGAAATGAGCAGACAACTGGAATCAAATCCTGAAATCAATATCTGCCAACCTATCATTGAAGAGCCAGCAACACCAGAGCCAGAATGTACACAAATAGCAGAAAATGATATAGAGGATGCCTTCTCTGGGGATCCTTGTGAAATTCCTACCATCAAACTTAACATCGAAGAGTTCACTCTGAATTTACAAAGTTATATGCAAGAAAACATGGAACTTGAGGAATGTGAAATGTCTAAGGCCTTGGTTGCTCTGACTCCAGAAGCTGCTTCCATTCCTACACCCAAGCTAAAGAATGTGAGCCAACTACGAACAGAGCATTGTGTTTATGAACTGCCAGATTCACATCCTCTTCTGCAAGGGTGGGACAACCGAGAACCTGATGATCCATGCAAATACCTTCTGGCTATATGGACTCCAGGTGAATCCGCAACTTCCATACAGCCACCTGAAAGCAAATGCAGCTCGCAAGAATGTGGCCAACTTTGTAACGAAAAGGAATGTTTCGCATGCAACAGTATCCGTGAAGCAAATTCACAGATAGTTCGAGGGACACTCCTGATACCATGCCGAACAGCTATGCGAGGGAGCTTTCCACTAAATGGCACCTATTTTCAAGTGAATGAGGTATTTGCTGACCACGACTCTAGTCTTAACCCAATTAATGTTCCCCGAAGTTGGATCTGGAATCTCAATAGGCGAACAGTATATTTTGGAACCTCCATACCATCAATATTTAAAGGTTTATCGACACAAGAAATTCAACAATGCTTTTGGAGAGGATATGTCTGTGTTCGGGGATTTGACAGGGAAAGACGAGCACCCCGTCCTCTGATGGCTAGACTGCACTTCCCAGCAAGCAAGTTAGCCAAGGCCAAAGATAAGACAAATAATAAGTAG 4929 0.4263 MEVGEVSRKELQEQVSWIPTTPVKPILPRSVPICSPKEGNQLDQTNCSRTSSCCISSNDSVVACFESSPGAEIKSSPQDWAAPAATVTNVAVNNVGTCVQPSFDNLSIWNNVRFSDLLALADAASAHTNATHLGNGMKIPIIPTLKSQFKGDPVANPTSTFLSHHNLSTNQITSSTIYGNPQEPQGTPCSACCSKTISQFAPPTPDKAIGAQGRQIAGMQINMEEKYQGEEETTLLATKLDVSEIPHNQELCDLVMESSFAAVSMPFKENHNPDKEGSHVIPKPCQSKENQNGKRKYVRRKGLNSTSTTPPTEVTGEFTELMMPEFNKKSCRKSLNFDIEEQSRDENSACRENATVHLRKGIGVSIAEMHVGFACDLNFSMKQGLNDYKSLPEDTQAPSMSLLKSNSPGTKLNAHSVKNNSKRKSQVTCQDGQRNNAKMTSKSRRPSSPNYSNSNNSGILTTGFQMGGSKRKHFSDIEHADTSSINLIGVQYNGLQVYQAMCRDQFPNVSKKRKSGKGKFSNTSNSDRQSFNDTGAPQTCNEPLVAEKHTSLTKKERAIKNILASSTYSSTNEAQVHHQFVLDALTEQFRHLQINSEARDQALHEQNTLIPYNQQNQKNKALVHGGGIIIPLESAFEHIRKRTRPKVELDEETNRVWQLLLLDINSHGVDGTDEEKAKWWEEERRVFRGRADSFIARMHLVQGDRRFSQWKGSVVDSAIGVFLTQNVSDHLSSSAFMSLAARFPLKSSSNCKTYHKEGTSLVVSKPQVHIVEPEENTKYDQNSMTIDIIERSEETEAVNSNDSSRTTCTVICEPQCSMLCGPTDTITGEGQETSYGGVREELNDKVSSQYSVISSQISGNFSTDQNLEKIGSCSDSNSEVEDLPSTAKYNIFDNITSFTKLLEMASSTMLHEVNSQGSKSTENLKDAYDQSIGMKHDNQTENLEISDVIQGSLEASIITSCEHTLKMTPNSGFDIHCFDTFKRESICGVSKSKDENDMDNPSLQTTESPAAITHSQSMLAQLHLQDQSNNMQQNLFCSSGKTQNVMQKARDLDSGDQNYAVWNEPLERNAAPTRPKSRRLGKKKKDNINWDNLRKQALAKTGKRERTANTMDSLDWDAVRCADVNEIADAIKDRGMNNVLAERIKNFLNRLVEEHGDVDLEWLREVPPDQAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPVLESIQKYLWPRLCKLEQRTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQNSIVSTAGNNATDQNRFIIVSPLSLPLPGHTNQAEEIQQTEMSRQLESNPEINICQPIIEEPATPEPECTQIAENDIEDAFSGDPCEIPTIKLNIEEFTLNLQSYMQENMELEECEMSKALVALTPEAASIPTPKLKNVSQLRTEHCVYELPDSHPLLQGWDNREPDDPCKYLLAIWTPGESATSIQPPESKCSSQECGQLCNEKECFACNSIREANSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPINVPRSWIWNLNRRTVYFGTSIPSIFKGLSTQEIQQCFWRGYVCVRGFDRERRAPRPLMARLHFPASKLAKAKDKTNNK 1642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1075 1642 FunFam DNA glycosylase/AP lyase ROS1 1189 1297 - -
Glsi11g1075 1642 SMART ccc3 1268 1288 IPR003651 GO:0051539
Glsi11g1075 1642 SUPERFAMILY DNA-glycosylase 689 1290 IPR011257 GO:0003824|GO:0006281
Glsi11g1075 1642 MobiDBLite consensus disorder prediction 270 314 - -
Glsi11g1075 1642 Gene3D - 1197 1285 IPR023170 -
Glsi11g1075 1642 Pfam RRM in Demeter 1527 1627 IPR028925 -
Glsi11g1075 1642 MobiDBLite consensus disorder prediction 398 469 - -
Glsi11g1075 1642 MobiDBLite consensus disorder prediction 398 464 - -
Glsi11g1075 1642 MobiDBLite consensus disorder prediction 509 542 - -
Glsi11g1075 1642 Gene3D Hypothetical protein; domain 2 1104 1196 - -
Glsi11g1075 1642 CDD ENDO3c 1115 1233 IPR003265 GO:0006284
Glsi11g1075 1642 SMART endo3end 1097 1267 IPR003265 GO:0006284
Glsi11g1075 1642 MobiDBLite consensus disorder prediction 1065 1086 - -
Glsi11g1075 1642 Pfam Permuted single zf-CXXC unit 1493 1524 IPR028924 -
Glsi11g1075 1642 Coils Coil 1399 1419 - -
Glsi11g1075 1642 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 269 530 IPR044811 GO:0019104|GO:0035514|GO:0080111
Glsi11g1075 1642 MobiDBLite consensus disorder prediction 519 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1075 Glsi-ChrGlsi11 6744990 6754615 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g0687 12 23379765 23392280 Glsi11g1075 11 6744990 6754615 CCT
Glsi11g1075 11 6744990 6754615 Glsi11g1075 11 6744990 6754615 ECH