Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1344 ATGGCCATCCAGAGGCATCTCCTATCATCCTTCTTCATCATCATTTCTTTTGTTGCTTGTCATACCACTTTGCAAGAGGACCCACTTATTATGTATGCTGATGATTCACCTTCCGTTGATGATGGTGGCACTGGGACATTTAAGAACTTGATCAAGCAACGCACTGAAGTTTTGAGCTTAAATAGGTTTGATAAGTTTCAGGTTGGCTCTTCTCCTTCGCTTAACACGGTTAATGTCAATGATTATGGAGCTAAAGGGGACGGTACTACTGATGACACGCAGGCGTTCAAGAAGGCTTGGCAAGTTGCATGCTCTTCTGGGCAACAAGCAGTTCTTGTGGTGCCTCAGCAGAACTATCTACTCAAGCCAATAAGATTCTCTGGCCCTTGCAAATCTAACATTACAATGAAGATTTCTGGAATTCTTGAAGCGTCGGATGATCGTTCAGACTACAGCCAAGACCCCACACACTGGCTAATGTTCGACAGTGTTCAGGAGCTATCAGTTCAAGGTAAAGGAACCCTCAATGGAAATGGAAACGTATGGTGGACAAACTCATGCAAAAGGAACAAAAAACTCGCTGTGACTTTCTTTAAGTGCCGGAATTTGGTAGTTGAGAACTTGACGGTAAAAAATGGCCAACAAATCCATGTTTCTTTCCAGGACTCCACGTATGTTAGAGCTTCCGGTCTCACTGTGACAGCACCCAAGGATAGCCCCAACACCGATGGCATTCATGTCACAAATACCCAAAACATCCAAATCGAAAGTTCCGTTATAGGAACTGGAGATGATTGTATATCAATTGTAAGTGGGTCCCAGAACTTACGAGTCACAAACATAACCTGCGGACCAGGCCATGGTATCAGTATCGGAAGCTTGGGGGCCAAAAAACACAAGGATTTTGTTTCTGACATAACTGTGAATGGAGCCAAATTATCAGGAACTACAAATGGAGTTAGAATTAAGACATGGCAGGGTGGGTCAGGAAGTGCAAGCAACATCAAGTTCCAGAATATCGAAATGGACAATGTGGCCAACCCCGTAATAATTGACCAAAACTACTGTGACCAAAAGAAGCCATGCAAACAACAGCTCTCGGCCGTTCAGATAAGGAACGTGTTGTACCAGAACATAAAAGGTACAAGTGCTTCGGATGTGGCCGTGAGGTTTGATTGCAGCCAGAGCTTTCCATGCCAGGGGATAGTATTGCAGAACGTAGACCTTCAACTTGAAGCAGGAGAAGCTGCAAAGGCTCTATGTAACAGTGTTGAAATGTCCTACATTCAAGACGTTAGCCCTCGCTGCCCATAG 1314 0.4444 MAIQRHLLSSFFIIISFVACHTTLQEDPLIMYADDSPSVDDGGTGTFKNLIKQRTEVLSLNRFDKFQVGSSPSLNTVNVNDYGAKGDGTTDDTQAFKKAWQVACSSGQQAVLVVPQQNYLLKPIRFSGPCKSNITMKISGILEASDDRSDYSQDPTHWLMFDSVQELSVQGKGTLNGNGNVWWTNSCKRNKKLAVTFFKCRNLVVENLTVKNGQQIHVSFQDSTYVRASGLTVTAPKDSPNTDGIHVTNTQNIQIESSVIGTGDDCISIVSGSQNLRVTNITCGPGHGISIGSLGAKKHKDFVSDITVNGAKLSGTTNGVRIKTWQGGSGSASNIKFQNIEMDNVANPVIIDQNYCDQKKPCKQQLSAVQIRNVLYQNIKGTSASDVAVRFDCSQSFPCQGIVLQNVDLQLEAGEAAKALCNSVEMSYIQDVSPRCP 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1344 437 Pfam Glycosyl hydrolases family 28 104 425 IPR000743 GO:0004650|GO:0005975
Glsi11g1344 437 SMART pbh1 200 249 IPR006626 -
Glsi11g1344 437 SMART pbh1 303 324 IPR006626 -
Glsi11g1344 437 SMART pbh1 273 293 IPR006626 -
Glsi11g1344 437 SMART pbh1 332 353 IPR006626 -
Glsi11g1344 437 SMART pbh1 250 271 IPR006626 -
Glsi11g1344 437 FunFam Polygalacturonase QRT2 64 437 - -
Glsi11g1344 437 SUPERFAMILY Pectin lyase-like 73 436 IPR011050 -
Glsi11g1344 437 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Glsi11g1344 437 PANTHER - 75 422 - -
Glsi11g1344 437 Gene3D - 64 434 IPR012334 -
Glsi11g1344 437 ProSitePatterns Polygalacturonase active site. 280 293 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1344 Glsi-ChrGlsi11 8436241 8438265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1344 36 436 Glycoside Hydrolase AT2G41850 54.722 1.03e-145 420
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1344 11 8436241 8438265 Glsi02g2354 02 73851668 73860972 CCT
Glsi11g1344 11 8436241 8438265 Glsi11g1344 11 8436241 8438265 ECH