Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2354 ATGGATGTAAGAGCGTCATGTTTTTATCTTTCGAATAAAAGGTCACATCTTTTTCGAATCCCAATTATGCTTTACTTTAACTGGAATCCAAGACTTACCCACCACCTTTCAAAAAGAGCATCTGTATCTCTTTACTTAACAAAGGGAAAAGTTGTAATAATGGCCCCGCTTCAAAGACATATCCTCTCATTCTTCATCATTATCATTCCTTTTGTTGTTTGTTATAGCACCTCGCAAGAGGACCCACCAAATATATATGTCGATCATGATAGGACATTCAGGAACTTGATCCACCAAAGCAGACTTGTTTTTAGCTTGAAGAGGTTTGATAAGTTGGGTGGCACTTCTTCTTCACTTAAAATGGTAAATGTCAATCATTTTGGAGCTAAAGGGGACGGCACTAGTGATGACACAGAGGCATTTATGCATGCTTGGCAAGTAGCATGTTCTTCTGGGGATGCAGCTCTGTTGGTGCCTCAGAATAATTATCTACTCAAGCCTATAACATTCTCTGGCCCCTGCAAATCTAACATTGCAGTCCAGGTTTCTGGCACCATTGAAGCATCAGGGAATCCATCAGACTACAGCGAAGACCCCGCACACTGGCTCATGTTTGAGGCTGTTCAGAAACTAAAAGTTCAAGGAGGTGGAACCATCGATGGAAATGGAAACATATGGTGGCAAAACTCTTGCAAAAAGAACACAAAACTCGCTGTGACTTTCTCTAACTGCGATAATTTGATAGTTGAGGACTTGACAATAAAAAATGGACAACAAATCCATGTTACTTTCCAGGAGTCTACCAACGTTAGCGTTTCTGGTCTAACTGTGACTGCACCAGAGGACAGCCCTAACACCGATGGAATTCATGTCACAAATACCAGAAACATCCAAATCTCAAGCTCAATCATAGGAACTGGAGATGATTGTATATCAATTGTAAATGGAACCCAGGATTTACAAGCCACAGGTATAACCTGCGGACCAGGCCATGGGGAGGCAGAATCGGGGGAATTTGTTTCAGGAATAACAGTGAACAGGGCTAAGCTTTCCGGAACTACAAATGGAGTTAGAATTAAGACATGGCAGGGAGGGTCAGGAAGTGCCAGCAACATCAAGTTTCAAAATATTGAAATGGAGAATGTGGCCAACCCCATAATAATCGATCAGAACTACTGCGACCAAGAGAATCCATACCAACAAGAGCACTCGACAGTTCAGTTAAGGAATGTGCTATATCAGAACATAAAAGGTACAAGTGCTTCTGAAATTGGTGTGAACTTGAATTGCAGCCCGACCTTTGCATGCCAGGGGGTAGTTTTGCAGAACATAGAGCTGCAACAAGGAGGAGGAAAAGCTTCCAAAGCTTCTTGTAACAGTGTTAAATTGTCTTATGTTGGAGACATTTCCCCACGCTGCCCATAG 1425 0.4218 MDVRASCFYLSNKRSHLFRIPIMLYFNWNPRLTHHLSKRASVSLYLTKGKVVIMAPLQRHILSFFIIIIPFVVCYSTSQEDPPNIYVDHDRTFRNLIHQSRLVFSLKRFDKLGGTSSSLKMVNVNHFGAKGDGTSDDTEAFMHAWQVACSSGDAALLVPQNNYLLKPITFSGPCKSNIAVQVSGTIEASGNPSDYSEDPAHWLMFEAVQKLKVQGGGTIDGNGNIWWQNSCKKNTKLAVTFSNCDNLIVEDLTIKNGQQIHVTFQESTNVSVSGLTVTAPEDSPNTDGIHVTNTRNIQISSSIIGTGDDCISIVNGTQDLQATGITCGPGHGEAESGEFVSGITVNRAKLSGTTNGVRIKTWQGGSGSASNIKFQNIEMENVANPIIIDQNYCDQENPYQQEHSTVQLRNVLYQNIKGTSASEIGVNLNCSPTFACQGVVLQNIELQQGGGKASKASCNSVKLSYVGDISPRCP 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2354 474 PANTHER - 120 458 - -
Glsi02g2354 474 Gene3D - 114 469 IPR012334 -
Glsi02g2354 474 FunFam Polygalacturonase QRT2 109 474 - -
Glsi02g2354 474 SUPERFAMILY Pectin lyase-like 120 473 IPR011050 -
Glsi02g2354 474 Pfam Glycosyl hydrolases family 28 154 462 IPR000743 GO:0004650|GO:0005975
Glsi02g2354 474 SMART pbh1 369 390 IPR006626 -
Glsi02g2354 474 SMART pbh1 294 315 IPR006626 -
Glsi02g2354 474 SMART pbh1 340 361 IPR006626 -
Glsi02g2354 474 SMART pbh1 244 264 IPR006626 -
Glsi02g2354 474 SMART pbh1 267 293 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2354 Glsi-ChrGlsi02 73851668 73860972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2354 117 473 Glycoside Hydrolase AT3G07970 53.600 1.17e-131 386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1344 11 8436241 8438265 Glsi02g2354 02 73851668 73860972 CCT
Glsi02g2354 02 73851668 73860972 Glsi02g2354 02 73851668 73860972 ECH