Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1343 ATGGCTGCTTCCGGCCCTGGAAATGGAATTCAACTTAAGGTCTTACTTCCCATATACCAGTTTATGCACAACATTGTGCTGACTCCAGGATCTGTAAATGGGCTTGTTGCTGGTGCATTTGTTGGCGCCACAGCTTCCCACAGCAAAACCCTCCACGTCTTTCCTATGGGTGTCCTCCAAATGGGAACTTGCGGGAAAGATGTCCCTCTGGAAACCCAATTCATGCTGATAGAGAGCAAAGATGACGAAGGTTCTGACCAGGAGAATTCTCCAACCATCTACATTGTCTTGCTTCCTCTCCTGGAAGGTCAGTTCCGTGCTGTCCTACAAGGCAATGACAAAAACGAGTTAAAGATTTGCCTTGAGAGTGGAGATAGTGCTGTTGAGACCAATCAAGGACTTCACCTCCTGCCATCTTTTCTTGACTGGTTTGGCTGGTGTACGTGGGATGCTTTCTATACCGATGTCACTGCTGAGGGTGTTAAGGAGAGCCTAAAAAGCCTATCAGAGGGAGGTACACCTCCGCAGTTCCTCATCATAGATGATGGTTGGCAAGAGATTGAAAGTAAATCAAAGGATGCTGATTGTGTTGTACAAGAAGGTGCACAGTTCGCAAGCAGATTGACTGGCATAAAAGAGAATACTAAATTTCCAAAGAAAAAACAGAACAATGAACAGATCTCTGGCCTGAAGTATGTTGTGGATGAATCGAAACACCATCAAAATGTCAAAGTGTCACTTACACGCAGCTACCATCAGGCGCTTGAGGCCTCCATTGCTCGTAACTTCCCTGATAATGGATGCATTGCATAATACTCTGATCTGGACTTGCTCAAAATATGGAACTTGAACAAATGCTCTGGAGTGGTTGGTGTATTTAACTGCCAAGGCGCCGGGTGGTGCAAGATAGAGAAAAAGACTCGCATCCATGATGCATGTCCTGGTACCCTCACTGGCTCTGTTTCTGCCTTTGATGTTGATCTCATCGCTCAAGTTGCTGGTGCCGATTGGGATGGCGAGGCTATTGTTTATCCCTTCAGATCAGGCGAGGTGATTCGGTTACCAAAAGGTACCTCGGTGCCAGTGACATCAAAAGTTCTGGAGTATGAGCTTTTCCATTTCTGTCTGATCAAAAAAATCGTACCAAATATTTCATTTGCACCAATAGGGTTACTGGGTATGTTAAACACTGGAGGAGCAGTGGAGCAGGTTGAAATCCACAAAACTTCTGACAAAAAACCTCAACAATACGATGGTGAGGTCTTGTGGGATCTGATTACTGGTGAATCAGCAACAGCAACCATTGGTCTTAGAGTGAAGGGAAGTGGCAGATTTGGAGTGTACTCCTCGCAGCGCCCACTCAAGTGTATGGCGGGTGACACTGAAACCGACTTCAACTATGACACAGGGACTGGGTTGATGACCTTTGTCATCCCAGTTGCTGCAGATGAGATGTGCAGAAGGCTAGTGCAGATCGAAGTTTGA 1485 0.4606 MAASGPGNGIQLKVLLPIYQFMHNIVLTPGSVNGLVAGAFVGATASHSKTLHVFPMGVLQMGTCGKDVPLETQFMLIESKDDEGSDQENSPTIYIVLLPLLEGQFRAVLQGNDKNELKICLESGDSAVETNQGLHLLPSFLDWFGWCTWDAFYTDVTAEGVKESLKSLSEGGTPPQFLIIDDGWQEIESKSKDADCVVQEGAQFASRLTGIKENTKFPKKKQNNEQISGLKYVVDESKHHQNVKVSLTRSYHQALEASIARNFPDNGCIAXYSDLDLLKIWNLNKCSGVVGVFNCQGAGWCKIEKKTRIHDACPGTLTGSVSAFDVDLIAQVAGADWDGEAIVYPFRSGEVIRLPKGTSVPVTSKVLEYELFHFCLIKKIVPNISFAPIGLLGMLNTGGAVEQVEIHKTSDKKPQQYDGEVLWDLITGESATATIGLRVKGSGRFGVYSSQRPLKCMAGDTETDFNYDTGTGLMTFVIPVAADEMCRRLVQIEV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1343 494 PANTHER - 22 136 IPR008811 -
Glsi11g1343 494 Pfam Raffinose synthase or seed imbibition protein Sip1 244 272 IPR008811 -
Glsi11g1343 494 Pfam Raffinose synthase or seed imbibition protein Sip1 36 136 IPR008811 -
Glsi11g1343 494 Pfam Raffinose synthase or seed imbibition protein Sip1 276 477 IPR008811 -
Glsi11g1343 494 Pfam Raffinose synthase or seed imbibition protein Sip1 137 242 IPR008811 -
Glsi11g1343 494 SUPERFAMILY (Trans)glycosidases 140 245 IPR017853 -
Glsi11g1343 494 Gene3D Aldolase class I 120 229 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1343 Glsi-ChrGlsi11 8427712 8433017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1343 244 381 Glycoside Hydrolase AT3G57520 28.777 1.36e-08 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2355 02 73861148 73869073 Glsi11g1343 11 8427712 8433017 CCT
Glsi11g1343 11 8427712 8433017 Glsi11g1343 11 8427712 8433017 ECH