Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1039 ATGCCTCTTTCTTCCAATCTTGTGGCGCCCAAATCTTTGGCTCATGGTTTATCTAGTCAGAATCGGCCAAGTAATAGTATCGAGCAGCTCTGCTGTCCTGGGACACTTCTCGCTCTCTCTCGATGCCCAAAAGCAACCACCGACTTCATCTTTTCAGTTAAATTGAGGAAAACCCAGAAAGAACCGAAAATGAGGGGTTTTCTTCCCGTGGTCTTGACCTTAGCCACCGTGTTGGTACCGGTATCGGTAGTATACAGTGGATTGCCGGCGAGTTTTCTCCCTCTTGAACGGGCTATTCCTCTAAGTCAGCGAGTGGAACTGGAAGCACTCAGAGCTCGCGACAGAGCCAGGCATGCTCGAATCTTGAAAGATGTGGTGGGTGGTGTTGTCGACTTCTCAGTCGAAGGGACCTCCGATCCTTACTCCGTTGGGTACGGGCTGTACTTTACGAAAGTGAAGCTGGGCTCTCCTCCGAGAGAATTTAACGTCCAGATTGATACTGGAAGTGACATATTGTGGGTTACTTGCAATGCTTGCAATGATTGCCCTCAATCTAGTGATCTTGGGATTGAGCTCAATTACTTTGATACAGCCAGTTCATCCACGGCTATGCTCGTTTCCTGCTCAGACCCAATATGTACTTCTGCGCTTCAAAGTGCTGCCACCGAATGCTCCTCTCAGATTAATCAGTGCAGCTACACCTTCCAGTATGGAGATGGAAGTGGGACATCGGGTTATTATGTATCTGATGCTATGTATTTTGACATGATCGTGGGACAATCTACGCTTGCTAATTCCTCGGCTACCATTGTTTTTGGGTGTAGCACCTACCAGTCTGGAGATTTGACTAAGACAGATAAAGCAGTTGACGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTATGTCGCAATTGTCATCACGGAGCGTAACACCCAAAGTTTTCTCTCATTGCTTAAAAGGAGATGGCAATGGAGGAGGCATACTAGTTCTTGGTGAAATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTACAGAGCATTGCTGTCAATGGACAAATCCTCCCAATTGATTCATCTGTGTTTGCAACATCTACCAACCAAGGAACGATAGTTGACTCTGGTACAACATTGGCATACCTTGTTGAAGAAGCATATGATCCTTTTGTCGATGCTATAAGTACTGCTGTGTCACAATCTGCCAATCCCGTAATTTCAAAAGGATACCAGTGTTATCTTGTCTCAAACAGTGTAGGTGATATATTTCCTACCGTCAGTTTAAATTTTGCTGGTGGAGCATCCATGGTTTTAAAACCAGAACAGTACCTTATGCATTATGGTTTCCTAGATGGCGCTGCAATGTGGTGTATCGGTTTCCAGAAAGTGCAGGAGGGAGTCACAATTTTAGGAGATCTTGTCCTAAAGGATAAGATTTTTGTCTACGACTTAGCTCATCAACGAATTGGATGGGCTAACTATGATTGTTCCTTATCTGTAAATGTGTCCGTGACTAGGAGCAAGGATGAATACATCAATGCAGGACAGCACAGTGAGAGTAGCTCAAAGATCGACATTCTCAAAAAGTTGCTGCCTGTTAGCATTGCGACTCTCTTTATGTACATAATAGTTTTCATGGAATCCTTATCTTTGTGA 1686 0.4437 MPLSSNLVAPKSLAHGLSSQNRPSNSIEQLCCPGTLLALSRCPKATTDFIFSVKLRKTQKEPKMRGFLPVVLTLATVLVPVSVVYSGLPASFLPLERAIPLSQRVELEALRARDRARHARILKDVVGGVVDFSVEGTSDPYSVGYGLYFTKVKLGSPPREFNVQIDTGSDILWVTCNACNDCPQSSDLGIELNYFDTASSSTAMLVSCSDPICTSALQSAATECSSQINQCSYTFQYGDGSGTSGYYVSDAMYFDMIVGQSTLANSSATIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVMSQLSSRSVTPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQILPIDSSVFATSTNQGTIVDSGTTLAYLVEEAYDPFVDAISTAVSQSANPVISKGYQCYLVSNSVGDIFPTVSLNFAGGASMVLKPEQYLMHYGFLDGAAMWCIGFQKVQEGVTILGDLVLKDKIFVYDLAHQRIGWANYDCSLSVNVSVTRSKDEYINAGQHSESSSKIDILKKLLPVSIATLFMYIIVFMESLSL 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1039 561 PRINTS Pepsin (A1) aspartic protease family signature 381 392 IPR001461 GO:0004190|GO:0006508
Glsi11g1039 561 PRINTS Pepsin (A1) aspartic protease family signature 154 174 IPR001461 GO:0004190|GO:0006508
Glsi11g1039 561 PRINTS Pepsin (A1) aspartic protease family signature 478 493 IPR001461 GO:0004190|GO:0006508
Glsi11g1039 561 Gene3D Acid Proteases 132 334 IPR021109 -
Glsi11g1039 561 Gene3D Acid Proteases 335 513 IPR021109 -
Glsi11g1039 561 SUPERFAMILY Acid proteases 143 509 IPR021109 -
Glsi11g1039 561 PANTHER ASPARTYL PROTEASES 86 500 IPR001461 GO:0004190|GO:0006508
Glsi11g1039 561 FunFam Aspartic proteinase-like protein 2 335 513 - -
Glsi11g1039 561 ProSiteProfiles Peptidase family A1 domain profile. 148 502 IPR033121 -
Glsi11g1039 561 CDD pepsin_A_like_plant 148 506 IPR034161 -
Glsi11g1039 561 Pfam Xylanase inhibitor C-terminal 351 502 IPR032799 -
Glsi11g1039 561 FunFam Aspartic proteinase-like protein 2 129 334 - -
Glsi11g1039 561 Pfam Xylanase inhibitor N-terminal 148 333 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1039 Glsi-ChrGlsi11 6542944 6548201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1039 146 507 Miscellaneous Gene Families AT1G44130 27.865 2.38e-40 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2696 02 76461221 76466359 Glsi11g1039 11 6542944 6548201 CCT
Glsi11g1039 11 6542944 6548201 Glsi11g1039 11 6542944 6548201 ECH