Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g2696 ATGCGTTGTTTCTTTCCCATGTTATTGGCCTTAGCCACCGTGTTGTTCCCGGTACCGGTTGTATGCGGTGGATTGCCGGGAAGTTTCCTCCCTCTTGAACGGGCTTTCCCTCTTAGTCGGCAAGTGGAACTGGAAGCACTCAAAGCTCGCGACGGAGCTAGGCATGCTCGAATCTTGCAAGGTGTTGTAGGTGGCGTTGTTGACTTTTCAGTCCAAGGGACCTCCGACCCTTCCAGCCTTGGGCTGTATTATACGAAAGTGAAGCTGGGCTCTCCTCCAAAAGAATTCAACGTCCAGATTGATACTGGAAGTGATATCTTGTGGGTTACTTGCAATACTTGCGGTGATTGCCCTCAATCTAGTGAACTGGGGATTGAGCTCAATTTCTTTGATACAGCCAGCTCGTCCACAGCTGCACTGGTTTCCTGTGCAGACCCAATATGCACTTCTACTCAAAGTACGGCAACTGAATGCACCCGTCAGATTAATCAGTGCAGCTACACCTTTCAGTTTGGAGATGGAAGTGGAACATCAGGTTATTATGTGTCAGATGCGATGTATTTTGACATGATCCTTGGACAGTCTACGCTGGCTAACTCTTCAGCCAAAATTGTTTTTGGGTGTAGCACTTATCAATCTGGAGATTTGACTAAGACAGATAAAGCAGTGGATGGAATTTTTGGGTTTGGCCCTGGTCCTCTATCCGTTATATCACAATTGTCATCACGAGGCATAACCCCCAAAGTGTTCTCTCACTGCTTAAAAGGAGAGGGGAGTGGAGGAGGCATACTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAACCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAGCTTCTTCCTATTAATTCAGCTGTATTTGCTACATCTAACAACCGAGGAACTATAGTTGACTCTGGTACAACCTTGGCATACCTTGTTCAAGAAGCATTTGATCCTTTTGTCAATGCTATAACTACCATTGTGTCGCACTCTGCCAATCCCATTATTTCAAAAGGAAACCAATGTTATCTGGTCTCAGCCAGTGTAGGTGACATATTTCCTCCAGTCAGTTTGAACTTTGCTGGTGGAGCTTCCATGGTTTTAAAACCAGAGCAGTACCTTATGCATTATGATTTCCTCGACGGTGCTGCAATGTGGTGTATTGGTTTCCAGAAAGTGCAGGAGGGAGTCACAATTTTAGGAGATATTATCCTAAAAGACAAGATTGTAGTCTATGACTTAGCTCGTCAACGAATTGGATGGGCTAACTATGATTGTTCCTCGTCTGTAAATGTCTCTGTGACTACAAGCAAGGATGAGTACGTGAATGCAGGACAGCTGAGTGTGAGCGGCTCACAGTTAGACATTCTCACCAAGTTGCTACCCTTAAGCATTGCTGCTCTCTTTGTGCACATAATAGTTTTCGGGGAGTCCCATTTTTTTGCAATTTAA 1494 0.4465 MRCFFPMLLALATVLFPVPVVCGGLPGSFLPLERAFPLSRQVELEALKARDGARHARILQGVVGGVVDFSVQGTSDPSSLGLYYTKVKLGSPPKEFNVQIDTGSDILWVTCNTCGDCPQSSELGIELNFFDTASSSTAALVSCADPICTSTQSTATECTRQINQCSYTFQFGDGSGTSGYYVSDAMYFDMILGQSTLANSSAKIVFGCSTYQSGDLTKTDKAVDGIFGFGPGPLSVISQLSSRGITPKVFSHCLKGEGSGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPINSAVFATSNNRGTIVDSGTTLAYLVQEAFDPFVNAITTIVSHSANPIISKGNQCYLVSASVGDIFPPVSLNFAGGASMVLKPEQYLMHYDFLDGAAMWCIGFQKVQEGVTILGDIILKDKIVVYDLARQRIGWANYDCSSSVNVSVTTSKDEYVNAGQLSVSGSQLDILTKLLPLSIAALFVHIIVFGESHFFAI 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g2696 497 Gene3D Acid Proteases 67 268 IPR021109 -
Glsi02g2696 497 SUPERFAMILY Acid proteases 80 444 IPR021109 -
Glsi02g2696 497 FunFam Aspartic proteinase-like protein 2 66 268 - -
Glsi02g2696 497 Gene3D Acid Proteases 269 448 IPR021109 -
Glsi02g2696 497 Pfam Xylanase inhibitor C-terminal 285 436 IPR032799 -
Glsi02g2696 497 PANTHER ASPARTYL PROTEASES 30 434 IPR001461 GO:0004190|GO:0006508
Glsi02g2696 497 FunFam Aspartic proteinase-like protein 2 269 447 - -
Glsi02g2696 497 Pfam Xylanase inhibitor N-terminal 83 267 IPR032861 -
Glsi02g2696 497 CDD pepsin_A_like_plant 83 440 IPR034161 -
Glsi02g2696 497 ProSiteProfiles Peptidase family A1 domain profile. 83 436 IPR033121 -
Glsi02g2696 497 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Glsi02g2696 497 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Glsi02g2696 497 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g2696 Glsi-ChrGlsi02 76461221 76466359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g2696 67 442 Miscellaneous Gene Families AT1G44130 27.273 3.43e-39 145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2696 02 76461221 76466359 Glsi11g1039 11 6542944 6548201 CCT
Glsi02g2696 02 76461221 76466359 Glsi02g2696 02 76461221 76466359 ECH