Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0997 ATGGCTCTCTTTCTCGTTGCTTTATTATTCTTTATGGTCCCGTCAAGCAATGCCTCCGGACCACCTTCACCTGGCTACTGGCCGAGTTCCAAATTCAGGTCAATGAGCTTCTACAGAGGGTTTAGAAACCTCTGGGGTCCTCAGCACCAAAGTCTAGACCAAAATACATTAGCAATTTGGCTTGACAGAACCTCAGGAAGTGGCTTCAAGTCAGTTAGTCCATTTCGATCCGGATACTTTGGAGCTTCCATTAAGGTCCAACCTGGCTATACTGCAGGAGTTATAACAGCTTTCTACCTTTCAAACAATGAAGCGCATCCAGGCTTCCATGACGAAGTGGACATTGAGTTTCTGGGAACGACATTTGGAAAGCCTTATACTTTGCAGACGAATGTGTATATAAGAGGGAGTGGTGATGGGAAAATTATAGGCAGAGAGATGAAGTTCCGTCTCTGGTTTGATCCTACCAAAGATTTTCATCATTATGCTATACTTTGGAGTCCTAAGGAAATAATATTCCTTGTGGATGATGTGCCCATAAGGAGGTATCCGAGGAAGAGTGGGGCAACGTTTCCGCTGAGGCCAATGTGGGTATATGGTTCAATATGGGATGCCTCATCATGGGCAACTGAAGATGGAAAATACAAAGCCGATTACAGATACCAACCTTTTGTTGCAAGGTACACCAACTTCAAAGCTAGTGGTTGCTCAGCCTATGCCCCTGCTTGGTGTCATCCAGTCTCAGCCTCCCCATATCGGTCCGGTGGGTTGACCGGACAACAATACAGGGCCATGACATGGGTGCAAAGATACCACATGGTTTATAACTATTGCAATGACCCCAAAAGAGACCACAGACTAACACCTGAGTGTTGGGCTTAA 882 0.4569 MALFLVALLFFMVPSSNASGPPSPGYWPSSKFRSMSFYRGFRNLWGPQHQSLDQNTLAIWLDRTSGSGFKSVSPFRSGYFGASIKVQPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFRLWFDPTKDFHHYAILWSPKEIIFLVDDVPIRRYPRKSGATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTNFKASGCSAYAPAWCHPVSASPYRSGGLTGQQYRAMTWVQRYHMVYNYCNDPKRDHRLTPECWA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0997 293 Pfam Glycosyl hydrolases family 16 40 220 IPR000757 GO:0004553|GO:0005975
Glsi11g0997 293 FunFam Xyloglucan endotransglucosylase/hydrolase 24 293 - -
Glsi11g0997 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 59 278 IPR013320 -
Glsi11g0997 293 Gene3D - 17 291 - -
Glsi11g0997 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 254 291 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Glsi11g0997 293 PIRSF EndGlu_transf 2 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Glsi11g0997 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 16 228 IPR000757 GO:0004553|GO:0005975
Glsi11g0997 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 34 291 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0997 Glsi-ChrGlsi11 6291629 6293085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0997 1 291 Glycoside Hydrolase AT3G44990 64.948 7.28e-142 399
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2756 02 76985708 76988566 Glsi11g0997 11 6291629 6293085 CCT
Glsi11g0997 11 6291629 6293085 Glsi11g0997 11 6291629 6293085 ECH