Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0858 ATGGAGCCTTTGGCTAAACTGCATCACAGCTACCAGCCACTGCACCTCTCTTTCAATCACCATCGTTCATCATTCCCACGATCCTCATCTTCGGTGTCGTTCAAGTCTCTACCACTACCGGCGTCACCACCGCAATTTTCTTCCTCATTATTCAGGTTATCATCCATCAGAGCCTCATCCTCGTCGTCACAGTCATCGACTGACGCTGCTTTCCATAAACCCCGAAACACTTCAGCCCAGTTGCTCCAAGCCCTAAACCCCCTCTTATCAGCTGTCGTCAAAACCACCTGCATCATCATAACAGCAGCTGCATTTTCCTTCATGCGTCTACCCCACTTGCCCGTGATTGCAGCCCCACTTGTGCCACCTACGGTGGAGTCCACTGAAGAGTCGACGAAAAATTCTTCAAATGATGAAAACGAGAGAATTATTGAGGAGCAATTGAGCAACAATCCCACTGATATTGAAGCTCTTCGATCTCTCATCGAGATCAAGCTCAGAGCGCGCAAACTTGATGAAGCAATTCAGGTTATAGACCGTTTGATTGAACTCGAACCTGAAGAGCTTGAGTGGCCACTGCTGAAGGCTAACATGTATATCTATAATGGTAACTACGCATTGGCCAAAGATAAGTTCGAAGACATTCTAACGAAAGATCCCTATCGTGTCGAAGCTTATCATGGCCTGGTAATGGCAACTGCGGAATCGAATAAGCCATTGGAGGATTTGTTGAACAGGGTTGAAGAAGCAGTGAAGTTGTGCAAAAAGGAAAACCGGGAATCAGATGTCCGGGATTTAAAGCTCTTGATTGCGCAGATTAAACTCATGGAGGGAGACTTTTCTGATGCGCTGAAGGCCTATCAGGAGCTTGTAAAGGAAGAACCGAGAGATTTCAGGCCGTACTTATGTCAGGGTATCATATATACTCTTCTAAGAAAAAAAGATGAAGCCGAGAAACAATTTGACAAGTTCCGGAGTCTTATCCCTGAGAACCATCCTTATAAAGAGTATTTTGAGGACAATATGTTTGCAATGAAGTTTTTTCCAACGAAGGTAGAAAGGGAGGTATCAGGTGCGAAGAGCAAATGA 1089 0.4518 MEPLAKLHHSYQPLHLSFNHHRSSFPRSSSSVSFKSLPLPASPPQFSSSLFRLSSIRASSSSSQSSTDAAFHKPRNTSAQLLQALNPLLSAVVKTTCIIITAAAFSFMRLPHLPVIAAPLVPPTVESTEESTKNSSNDENERIIEEQLSNNPTDIEALRSLIEIKLRARKLDEAIQVIDRLIELEPEELEWPLLKANMYIYNGNYALAKDKFEDILTKDPYRVEAYHGLVMATAESNKPLEDLLNRVEEAVKLCKKENRESDVRDLKLLIAQIKLMEGDFSDALKAYQELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFDKFRSLIPENHPYKEYFEDNMFAMKFFPTKVEREVSGAKSK 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0858 362 ProSiteProfiles TPR repeat profile. 155 188 IPR019734 GO:0005515
Glsi11g0858 362 Pfam Tetratricopeptide repeat 271 323 - -
Glsi11g0858 362 SMART tpr_5 264 297 IPR019734 GO:0005515
Glsi11g0858 362 SMART tpr_5 189 222 IPR019734 GO:0005515
Glsi11g0858 362 SMART tpr_5 298 331 IPR019734 GO:0005515
Glsi11g0858 362 SMART tpr_5 155 188 IPR019734 GO:0005515
Glsi11g0858 362 ProSiteProfiles TPR repeat profile. 264 297 IPR019734 GO:0005515
Glsi11g0858 362 Coils Coil 240 260 - -
Glsi11g0858 362 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 42 332 - -
Glsi11g0858 362 Gene3D Tetratricopeptide repeat domain 126 341 IPR011990 GO:0005515
Glsi11g0858 362 SUPERFAMILY TPR-like 152 338 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0858 Glsi-ChrGlsi11 5414024 5415112 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2901 02 78028003 78029076 Glsi11g0858 11 5414024 5415112 CCT
Glsi11g0858 11 5414024 5415112 Glsi11g0858 11 5414024 5415112 ECH