Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0579 ATGGCGAAGCAAAGGGTATCCAGGTGCGGCATTGGTTCGTATGTTCTGCTCTTTATATGTTTGATACAGATACAAAGTCATTTGCATGTGCGTGCCATTTTGGACCCTCTTGATTTCTTGGCTTTGCAATCCATTCGCAAGGCTCTGGAGGATATGCCAGGATCGAATTTTCTTGCTTCCTGGGATTTCACTTCCGACCCATGTAATTTCCCCGGCGTTTACTGTGAGTCCGATAAGGTCATTGCCCTCAATCTCGGGGATCCCAGAGCCGGTGCTCCCGGTCTAACTGGCAAGCTCGACCCGGCCATCGGTAAGCTCTCTGCTCTCGCTGAGCTCACGGTAGTTCCGGGTAGAATATACGGTTCTCTGCCCCAGTCATTGTCTAATTTAAAGAACCTCAGGTTCCTCGGCATCAGCCGGAACTTCATATCCGGCGACATTCCAGCGACTTTGGGTCAGTTGCACAATCTCAGAACCCTGGACCTCAGCTACAATCAGCTAACCGGAAACGTACCTCCATCCATCGGAGCCTTACCGGGGCTAAACAATGTGATCCTCTGTCACAACCGACTCTCCGGTTCGGTCCCGTCGTTTGCATCAAAGACCCTAACCAGGCTAGACCTGAAGCACAATGCCTTGTCCGGTTCGCTGGCTCCCGATTCCCTCCCTCCCTCTCTCCAATACCTCTCTCTATCCTGGAACCAGCTGAGTGGGCCAGTGGACCGGCTGTTGAACCGGATGGACCAACTGAACTATCTGGACCTTAGCCTGAACCAGTTCTCGGGGATCATACCGGGTCGGATCTTCTCATTTCCACTCACCAATCTGCAATTAGAAAGGAACCAGTTTTGGGGTGCAGTGGAACCAATGGATCAGGTGACCATCCCAATCGTTGATCTTAGCTACAACAGGTTGTCGGGTCAAATATCGCCCATGTTCTCGAGCGTACAGAATCTGTACCTGAACAACAACCGGTTTACGGGTCAGGTTCCGGGCAGCTTCGTGGATCATTTGTTGGATGCTAGCATACAGATACTATATTTACAGCACAATTATCTGACAGGGATTGCGATCAGTCCGACGGCTGAGATTCCTTTAAGCAGCTCGTTGTGTCTAGAGTATAATTGCATGGTCCCGCCCATAGACTCACCTTGCCCTTTGAGGGCTGGGAAGCAGAAAACGAGGCCTACTGTGCAGTGCAATCACTGGAGAGGGTAA 1218 0.5115 MAKQRVSRCGIGSYVLLFICLIQIQSHLHVRAILDPLDFLALQSIRKALEDMPGSNFLASWDFTSDPCNFPGVYCESDKVIALNLGDPRAGAPGLTGKLDPAIGKLSALAELTVVPGRIYGSLPQSLSNLKNLRFLGISRNFISGDIPATLGQLHNLRTLDLSYNQLTGNVPPSIGALPGLNNVILCHNRLSGSVPSFASKTLTRLDLKHNALSGSLAPDSLPPSLQYLSLSWNQLSGPVDRLLNRMDQLNYLDLSLNQFSGIIPGRIFSFPLTNLQLERNQFWGAVEPMDQVTIPIVDLSYNRLSGQISPMFSSVQNLYLNNNRFTGQVPGSFVDHLLDASIQILYLQHNYLTGIAISPTAEIPLSSSLCLEYNCMVPPIDSPCPLRAGKQKTRPTVQCNHWRG 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0579 405 Gene3D Ribonuclease Inhibitor 201 384 IPR032675 -
Glsi11g0579 405 Gene3D Ribonuclease Inhibitor 38 200 IPR032675 -
Glsi11g0579 405 FunFam Nuclear pore complex protein NUP107 37 197 - -
Glsi11g0579 405 Pfam Leucine rich repeat 109 167 IPR001611 GO:0005515
Glsi11g0579 405 ProSiteProfiles Leucine-rich repeat profile. 156 178 IPR001611 GO:0005515
Glsi11g0579 405 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 15 405 - -
Glsi11g0579 405 Pfam Leucine rich repeat N-terminal domain 38 75 IPR013210 -
Glsi11g0579 405 SUPERFAMILY L domain-like 56 378 - -
Glsi11g0579 405 Pfam Leucine Rich repeat 200 215 IPR001611 GO:0005515
Glsi11g0579 405 Pfam Leucine Rich repeat 224 238 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0579 Glsi-ChrGlsi11 3686177 3687394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0579 95 356 Receptor kinase-like Gene Family AT5G62230 31.522 4.79e-23 99.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3254 02 80625372 80629585 Glsi11g0579 11 3686177 3687394 CCT
Glsi11g0579 11 3686177 3687394 Glsi11g0579 11 3686177 3687394 ECH