Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3254 ATGAATCATTATATGAATATGATTTCCGCCCAGGAGGGAAGAAATGATGGAGGCGCTATCTACAGGAGTTTGAGCTTCTCCGCTTACAAGAGTCAGTTTGATGAAATTTGGTCTTCACGCCATTTCCCATGTAGAATCCCTTGTTTCCCCTCACGGATTTCCACCTTCCCAGATAACCCCATCCCTTCCTCTTACCAAACCCGTCAACACACACTTCCATTACCCTATTCGCCTGGGCTTTCAGCTTTTCCTCTGATGGCTCAGCGAAGGGAATCCGGTTGTGGCATTGGTTCCTATATTCTGTTTTTCATGTGTTTGATACAGATACAATGTCATTTCCATGTGCTTGCCATTTTGGACCCTGTTGATTTCTTGGCTCTGCAATCTGTTCGGAAGGCTCTCAAGGATATGCCGGGATCGAATTTCTTTGCTTCTTGGGATTTCACTTCCGACCCATGTAATTTCGCCGGTGTTTACTGTGACTCCGACAAGGTCATTGCCCTCAATCTCGGCGATCCCAGAGCCGGTTCTCCCGGTCTTACAGGCAGGCTTGACCCGGCCATTGGTAAGCTGTCTGCTCTCGCCGAGTTCACGGTTGTGCCTGGTAGGATATACGGTTCTCTGCCTCAATCATTGTCTAATTTAAAGAACCTCAGATTCCTCGGCGTTAGCCGTAACTTCATTTCTGGCGAGCTTCCAGCGCACTTGGGCAGTTTGCGCAACCTCAGAACCCTCGATCTCAGCTACAATCAGTTGACTGGACACATTCCTCCATCCATCGGAGCCTTACCAGAGCTAAACAACTTGATCCTTTGCCATAACCGTCTTTCCGGTTCGGTCCCATCGTTTGCGTCAAAGACCATAACCCGACTCGACCTGAAGCACAATATTCTCACCGGTTCTCTCGCTCCCAATTCTTTCCCTCCGTCACTCCAATACCTCTCTCTATCCTGGAACAAGCTCAGCGGCCCAGTGGACCGGCTCTTGAACCGGATGAGTCAGTTGAACTACTTGGACCTTAGCCTGAACCAGTTCACAGGCATCATTCCGGCTCGCATCTTCTCATATCCACTCACCAATCTCCAACTGGAAAGGAACCAATTTTCCGGTCCGGTCCAGCCGGATAATCAGGTCAAAATCGCAACCGTCGATCTTAGCCACAACGGGTTGTCGGGTCAAATATCACCCATGTTCTCGACCGTGGAGAATCTCTACCTGAACAACAATAAGTTCACGGGTCGGGTACCTAGCAACTTCGTGGAGGGGTTATTGGCTGCAAGGATACAGATACTGTATTTACAGCACAACTATCTTACGGGCATTGAGATTAGTCCAACGGCAGAGATTCCTCTAAGCAGCTCGTTGTGTCTACAGTATAATTGCATGGTGCCGCCCATACAGACGCCGTGCCCCTTGAGGTCCGGGAAACAGATAACGAGGCCCACCGGACAGTGCAACGAGTGGAGAGGGTAA 1473 0.4969 MNHYMNMISAQEGRNDGGAIYRSLSFSAYKSQFDEIWSSRHFPCRIPCFPSRISTFPDNPIPSSYQTRQHTLPLPYSPGLSAFPLMAQRRESGCGIGSYILFFMCLIQIQCHFHVLAILDPVDFLALQSVRKALKDMPGSNFFASWDFTSDPCNFAGVYCDSDKVIALNLGDPRAGSPGLTGRLDPAIGKLSALAEFTVVPGRIYGSLPQSLSNLKNLRFLGVSRNFISGELPAHLGSLRNLRTLDLSYNQLTGHIPPSIGALPELNNLILCHNRLSGSVPSFASKTITRLDLKHNILTGSLAPNSFPPSLQYLSLSWNKLSGPVDRLLNRMSQLNYLDLSLNQFTGIIPARIFSYPLTNLQLERNQFSGPVQPDNQVKIATVDLSHNGLSGQISPMFSTVENLYLNNNKFTGRVPSNFVEGLLAARIQILYLQHNYLTGIEISPTAEIPLSSSLCLQYNCMVPPIQTPCPLRSGKQITRPTGQCNEWRG 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3254 490 Pfam Leucine rich repeat N-terminal domain 123 161 IPR013210 -
Glsi02g3254 490 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 100 490 - -
Glsi02g3254 490 SUPERFAMILY L domain-like 132 468 - -
Glsi02g3254 490 ProSiteProfiles Leucine-rich repeat profile. 241 263 IPR001611 GO:0005515
Glsi02g3254 490 SMART LRR_typ_2 332 356 IPR003591 -
Glsi02g3254 490 SMART LRR_typ_2 239 263 IPR003591 -
Glsi02g3254 490 Gene3D Ribonuclease Inhibitor 286 468 IPR032675 -
Glsi02g3254 490 Pfam Leucine Rich Repeat 241 263 IPR001611 GO:0005515
Glsi02g3254 490 FunFam Nuclear pore complex protein NUP107 121 282 - -
Glsi02g3254 490 Gene3D Ribonuclease Inhibitor 123 285 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3254 Glsi-ChrGlsi02 80625372 80629585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3254 126 440 Receptor kinase-like Gene Family AT5G62230 32.229 3.50e-37 144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3254 02 80625372 80629585 Glsi11g0579 11 3686177 3687394 CCT
Glsi02g3254 02 80625372 80629585 Glsi02g3254 02 80625372 80629585 ECH