Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0569 ATGTCCGGACTTGTGACGGTCATGAAGGCCGGAGGCTGCGGTGGTGGCAAGGGAACCAAAGCGGCTACAACCACCCAACTAGACAAAGACCACCTCTCCCGCCTCGCATTTCTCTTGACCACTTTGAGAAAATCCATGGTGTCCTGCCGGGTCGATCCACCCGACGATGTCATCTCCACTGTTCCTCGCATCGAAGCTGGTTGGCCGACCGACGTTCAGCACATCACTCACGTCACCTTCGATCGCTTCAATGGCTTTCTGGGTCTGCCTACTGAGTTCCAGGTCGAGATCCCGGCTCGGGTTCCCAGCGCTAGTATAAGTGTGTTTGGCGTCTCGGCAGAATCAATGCAGTGTTCTTATGATTCGAAAGGAAATAGTATCCCAACTATTCTGTTGCTAATGCAGGAGCGTTTATACTCACAGGGAGGCCTAAAGGCTGAAGGAATATTTCGCATAAACCCAGAAAACAGTCAAGAGGAGCTTGTGAGGGACCAGCTGAATAGGGGCATTGTGCCGGACGACATTGATGTCCATTGTTTGGCTGGCCTAATTAAAGCCTGGTTCCGTGAACTTCCTTCAGGAGTGCTAGATGGACTTTCCCCAGAGCAAGTTCTTCAGTGCAACACAGAAGAAGATTATGTTGAGCTTGTGAAGCAACTGAAGCCCACTGAGGCTGCCTTGCTCAAGTGGGCTATTGATCTCATGGCTGATGTTGTTGAAGAGGAGGACTACAACAAAATGAATGTGAGAAATATTGCCATGGTCTTTGCTCCAAATATGACTCAGATGTCTGATCCACTAACGGCTCTGATGCATGCGGTCCAAGTGATGAACTTACTGAAGACCCTGATAATGAAGACACTTACAGAACGTGAAGAAACGGCAGAAGGCGAATATTCGCCCTTGTCGTTTCATTCATCAGATCGCCAATCTGAAGATGAATATGAAAGTCAGCAAGAAATGGATACAAGTGGTGAATTGAGAGAGACCAAGTCAGATTATGATGATCCTGCTTCCTACAGCAATAGCAGTAAAGAGGAAGAAGGGGAAGCCGAAGAATTATGTGAAACAGAGGAGTGCTGTTTGAAGCAGTTGGACGAGAACAAAAAAGTATTCTCAGTAGAGGCTGAAGGAATTTTGCAAGAGCAATATGGGAGCCCCGGAAGTTGGTCCGGCTCTAACGTGGAATCTTCTAAGTTATTTATGGATAGCAAAACTGGGAATTCCTGCTGCAGTTCCTCTTGCGAAGAAAAGTCAAGGACAACTCTTTCCGCTGTGGGATCTAATGTTGATTCAAGTAGTCCATCTATAGGATGTTCAGGCACCGATGATACAGAGATGATAAATAAATTAACAGACTCTGTTTCACCGGTGCCGCTGTTTGCATCTCGTTAA 1395 0.471 MSGLVTVMKAGGCGGGKGTKAATTTQLDKDHLSRLAFLLTTLRKSMVSCRVDPPDDVISTVPRIEAGWPTDVQHITHVTFDRFNGFLGLPTEFQVEIPARVPSASISVFGVSAESMQCSYDSKGNSIPTILLLMQERLYSQGGLKAEGIFRINPENSQEELVRDQLNRGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEDYVELVKQLKPTEAALLKWAIDLMADVVEEEDYNKMNVRNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLTEREETAEGEYSPLSFHSSDRQSEDEYESQQEMDTSGELRETKSDYDDPASYSNSSKEEEGEAEELCETEECCLKQLDENKKVFSVEAEGILQEQYGSPGSWSGSNVESSKLFMDSKTGNSCCSSSCEEKSRTTLSAVGSNVDSSSPSIGCSGTDDTEMINKLTDSVSPVPLFASR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0569 464 Gene3D Rho GTPase activation protein 97 294 IPR008936 -
Glsi11g0569 464 SMART RhoGAP_3 125 288 IPR000198 GO:0007165
Glsi11g0569 464 MobiDBLite consensus disorder prediction 307 348 - -
Glsi11g0569 464 Pfam RhoGAP domain 128 262 IPR000198 GO:0007165
Glsi11g0569 464 SUPERFAMILY GTPase activation domain, GAP 107 285 IPR008936 -
Glsi11g0569 464 SMART PBD_5 66 100 IPR000095 -
Glsi11g0569 464 PANTHER MKIAA1688 PROTEIN 25 363 IPR044785 GO:0005096
Glsi11g0569 464 Gene3D CRIB domain 64 96 IPR036936 -
Glsi11g0569 464 CDD RhoGAP 128 284 - -
Glsi11g0569 464 ProSiteProfiles Rho GTPase-activating proteins domain profile. 111 292 IPR000198 GO:0007165
Glsi11g0569 464 FunFam Rho GTPase-activating protein 5 96 289 - -
Glsi11g0569 464 MobiDBLite consensus disorder prediction 426 445 - -
Glsi11g0569 464 MobiDBLite consensus disorder prediction 292 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0569 Glsi-ChrGlsi11 3633328 3635872 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3272 02 80757525 80759628 Glsi11g0569 11 3633328 3635872 CCT
Glsi11g0569 11 3633328 3635872 Glsi11g0569 11 3633328 3635872 ECH