Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0549 ATGGGAAGACATTCTGTCAGTGTATGTTCCATCTCTTTATATCATCTGATTTTGCTCAGTGTGGTAGAACACCATTCCTCAACCCCTGTTCTCATGGTCCCACCTTTTTTGTTAGTGGTCAAAGTGGACAGCAGTAGATCGGGATTTGGAGGTAGTGTTCAAAGCTTGCTTTGCACAAGTGCAGATCCTCCAGCATCTTCCGTCATTGATATGCTGGTCACTCCATACCCAGTTGGGTCTTGGCTGTCTACCTTGGCTCCTTCAACAACATCTTCAGAGCTTCCGCCTGAACTGATGTCAGGATTCAAAAAGGAATCAATGTCTCCTGCTGGAAATAATTCCAGCAGTTCTGTGCTCCTTCCTCGAGCTGATCTGCTGCTTTTGATTTTAGACTTCTTTAGAGTGACGATTTTTAGTGGGGTGGCAGAATTATCACAATTGCCAGGTTTGGAGGAGATGGGTGTTGTTACTGTCGGTGAATTAAAGCCCAGCATGTCAGGGAAGAGGTCTATTCGTCCAAGTTCAAGCATAAGGCATGCCACTGAATGGCCAATATCTGACGTTTCTAGTGATCTTACCATCGAAGTAGGAACATCAAGCTTAGCACTTCACAAGTTTCCTCTAGTTTCTCGAAGTGGAAGAATTCGGAAATTGCTGTTAGAAGCCAAAGATTCAAAAGTTTCGCGCATAAGTCTTCCAGCTGTACCAGGCGGACCAGGGGCATTTGAGCTAGCCGCCAAGTTCTGTTATGGAATTAATGTTGAGTTCACCCTCTCAAATGTTGCTATGCTCCGTTGTGTATCCCATTATCTGGAAATGACAGAAGAGTTTGCAGAGAAAAACTTGGATACCCAGGTGGAAGCATATCTAAAGGAGACAGTGCTCCCAGACATATCAAACACAATAATTGTTCTTCATCATTGTGAAATTCTTCTACCCATATCAGAGGAGATAAACCTCGTTAGCAGGCTAATCAATGCAGTTGCAAATAATGCATGCAAAGAGCAGCTCACCTCCGGCTTGCAAAAACTTGACCACAATTTCCCTTCTAAAAACATCTCAAACATGGAACCAGAAACGCCCTCAGATTGGTGGGGAAATTCTCTCAACGTTCTTAGTCTTAATTTCTTCCAACGAGTTCTATCTGCAGTAAAGTCAAAGGGACTAAAACAGGACATGATCAGCAAAATCTTGATAAACTATACACAGAATTCTCTTCAGGTTGTTAGGGACTCCGAAGGGGTCAAAGGAAGTTCACCGGATTTAGAAACGCAGAAGAAACAAAGGGTCATTGTTGAAACCATAGTTAGCTTACTACCGACTCAATCAAGGAAAAGCCTGGTTCCAATGGCATTTCTTTCAAATTTGTTGAAAGCTGCAATAGAAGCATCAGCATCTAATTCTAGCAGATCTGATTTGGAGAGGCGGATCGGTCTGCAACTTGACCAGGCAATTCTTGAAGACATCCTCATTCCGGCAAATTCACATCAAAATACCCACAACACAACTTATGATATAGATTCAATTTTGAGGATCTTTTCCAATTTTCTAAAACTGGATGAGGATGACAATGAAGATAGTGACTTAAGAGATGAAAGTGAAATGGTGTATGACTTTGACTGTCCTGGATCCCCAAAACAAAGCTCAATTCTGAAGGTGTCTAAGTTGTTGGACAATTATCTTGCTGAAGTAGCACTAGACCCAAATATGTTGCCTTCAAAATTCATAGCACTGGCGGAACTACTTCCAGATCATGCACGTTCTGTAAGTGATGGACTTTACAGAGCTGTTGATATCTTCCTTCAGGTTCATCCAAATATTAAGGAGTCAGAGCGCTACCGCCTCTGCAAAACCATAGATTGTCAGAAACTGACTCAAGAAGCATGTAGCCATGCAGCACAAAATGAAAGGCTGCCGGTGCAGATATCAGTGCAAGTTCTTTACTTTGAGCAACTTAGGCTTCGCAATGCTATGAGTGGGGGACACAACCAAATATTCTTTGGTGGACTGAATGGTCAATTCCCTCAACGTTCTGGTAGTGGTGCAGGAAGTGGAGCTATTTCCCCAAGAGATAACTATGCATCGGTAAGAAGAGAGAACCGGGAGCTGAAGCTTGAGGTTGCGAGAATGAGAATGAGGCTGACTGACTTGGAGAAAGATCACGTTCATATGAAGCAGGAGTTTGTAAGGTCTCATCCTGCAAGCAAGCTATTTAAATCATTCACCAAAAAACTGAGCAAGCTCAATGCTCTATTTCGTATTAACAGTATCAAGCCAATTCGTGGCAAAACTAGTTCAGAGAGTCGGTTCCCTTTCCAAAAGCGAAGGCGTCACTCAGTTTCATGA 2346 0.4275 MGRHSVSVCSISLYHLILLSVVEHHSSTPVLMVPPFLLVVKVDSSRSGFGGSVQSLLCTSADPPASSVIDMLVTPYPVGSWLSTLAPSTTSSELPPELMSGFKKESMSPAGNNSSSSVLLPRADLLLLILDFFRVTIFSGVAELSQLPGLEEMGVVTVGELKPSMSGKRSIRPSSSIRHATEWPISDVSSDLTIEVGTSSLALHKFPLVSRSGRIRKLLLEAKDSKVSRISLPAVPGGPGAFELAAKFCYGINVEFTLSNVAMLRCVSHYLEMTEEFAEKNLDTQVEAYLKETVLPDISNTIIVLHHCEILLPISEEINLVSRLINAVANNACKEQLTSGLQKLDHNFPSKNISNMEPETPSDWWGNSLNVLSLNFFQRVLSAVKSKGLKQDMISKILINYTQNSLQVVRDSEGVKGSSPDLETQKKQRVIVETIVSLLPTQSRKSLVPMAFLSNLLKAAIEASASNSSRSDLERRIGLQLDQAILEDILIPANSHQNTHNTTYDIDSILRIFSNFLKLDEDDNEDSDLRDESEMVYDFDCPGSPKQSSILKVSKLLDNYLAEVALDPNMLPSKFIALAELLPDHARSVSDGLYRAVDIFLQVHPNIKESERYRLCKTIDCQKLTQEACSHAAQNERLPVQISVQVLYFEQLRLRNAMSGGHNQIFFGGLNGQFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVHMKQEFVRSHPASKLFKSFTKKLSKLNALFRINSIKPIRGKTSSESRFPFQKRRRHSVS 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0549 781 Coils Coil 693 727 - -
Glsi11g0549 781 Pfam NPH3 family 363 629 IPR027356 -
Glsi11g0549 781 SUPERFAMILY POZ domain 174 275 IPR011333 -
Glsi11g0549 781 Pfam BTB/POZ domain 189 292 IPR000210 GO:0005515
Glsi11g0549 781 FunFam BTB/POZ domain-containing protein At1g03010 168 286 - -
Glsi11g0549 781 Gene3D Potassium Channel Kv1.1; Chain A 175 295 IPR011333 -
Glsi11g0549 781 PANTHER OS12G0117600 PROTEIN 186 742 IPR043454 -
Glsi11g0549 781 ProSiteProfiles NPH3 domain profile. 363 653 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0549 Glsi-ChrGlsi11 3555526 3563890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0549 153 603 EF-hand Containing Proteins AT2G47860 58.799 4.46e-180 522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3307 02 80946388 80950755 Glsi11g0549 11 3555526 3563890 CCT
Glsi11g0549 11 3555526 3563890 Glsi11g0549 11 3555526 3563890 ECH