Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0485 ATGTGGCGCTCAGGGCTGACCGCCTATCAAGGATCCGAAAAACACGGGGATATAAAGAGGACGAGACGAAGTATAGCAATAGAAGAGGGTGTGCAGCTTGCAGGTTGGTTGTTGTTGATTGGCCAATATCACTTTGGGCACTTCACCATGACTTTCTTCCTCTCTTTCTCCACTCTGCTCTTCCTCCTTTCTTTCTTTTCTGCCACTCCGCTCCATTCTCATGCCTTCCCTCGCTATGCCACTCACAATTACAGAGATGCCCTCACCAAATCCATCCTCTTCTTTGAAGGTCAGAGGTCAGGGAAACTCCCTCCTAATCAGAGGATGACTTGGAGGAGGGACTCTGGTCTCTCAGATGGCTCAGCCATGAATGTTGATTTGGTTGGAGGGTACTACGATGCAGGGGACAATGTCAAGTTCGGTTTTCCCATGGCATTCACGGGCACCATGCTTTCATGGAGTGTTATTGAGTTCGGTGGGCTGATGAAAGATGAATTGCAGAATGCTAGAGAGGCGATTCGCTGGGCTACCGATTACCTCCTAAAAGCCACTGCAGATCCAGATACCATTTATGTTCAGGTGGGAGATGCTACGAAGGACCACGCTTGTTGGGAGAGACCTGAAGACATGGATACGCCAAGAAGTGTCTATAAGATAGATGAAAACACCCCTGGTTCAGAAGTGGCCGCTGAAACTGCTGCGGCTCTTGCTGCTGCTTCTCTGGTTTTCAAAACAAGTGACCCCGCATACTCCAAAACTCTTGTCACGAGGGCTATTAGGGTCTTCCAGTTTGCGGATAAATACAGGGGATCTTACAGCAATGGCTTGAAACCCATTGTATGCCCTTTCTATTGCTCTTACTCTGGCTATCAGGATGAGCTGTTATGGGGTGCTGCTTGGCTGCACAAGGCTACCAAGAACCCAATGTACCTGAACTACATTCAAATTAATGGCCGGACCCTTGGGGCTGCGGAGTTTGAAAATACCTTTGGGTGGGATAACAAGCATGTTGGAGCAAGAATACTTCTTTCGAAGGAATTTCTTGTTCAAAGTGTACAAGCCCTCCATGACTACAAGGGTCGCGCGGACAATTTCATCTGTTCTCTGATTCCTGGGACCTCTTTCTCTTCCGCTCAGTATACCCCAGGTGGTCTTCTGTTCAAGATGAGCAATAGCAATATGCAGTATGTGACGTCCACTTCCTTCTTACTTTTAACCTATGCCAAATACTTGACCTCAGCCCACACGACTGTGAACTGCGGTGGAACCACGGTAACCCCAAAAAGCCTTCGGACAATAGCGAAGAAACAGGTGGATTACTTGCTCGGAGACAACCCCTTGAAGATGTCGTACATGGTAGGGTACGGTCCAAGTTACCCAAGAAGGATACACCACAGGGGCTCATCTCTACCGTCGATTGCGCTCAACCCTGCCAAGATCCAGTGCACAGTAGGGTTCAGTTTGATGAATTCAGAATCCCCCGATCCCAACATTCTAGTGGGTGCGGTTGTTGGTGGGCCCGACATAAATGATGGTTTCCTGGATGAACGGTCAGATCATGAGCAATCAGAACCAGCCACATATATTAACGCACCCCTGGTAGGAGCACTGGCTTATCTTGCTCACTCATTCGGCCAACTCTAG 1644 0.4872 MWRSGLTAYQGSEKHGDIKRTRRSIAIEEGVQLAGWLLLIGQYHFGHFTMTFFLSFSTLLFLLSFFSATPLHSHAFPRYATHNYRDALTKSILFFEGQRSGKLPPNQRMTWRRDSGLSDGSAMNVDLVGGYYDAGDNVKFGFPMAFTGTMLSWSVIEFGGLMKDELQNAREAIRWATDYLLKATADPDTIYVQVGDATKDHACWERPEDMDTPRSVYKIDENTPGSEVAAETAAALAAASLVFKTSDPAYSKTLVTRAIRVFQFADKYRGSYSNGLKPIVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIQINGRTLGAAEFENTFGWDNKHVGARILLSKEFLVQSVQALHDYKGRADNFICSLIPGTSFSSAQYTPGGLLFKMSNSNMQYVTSTSFLLLTYAKYLTSAHTTVNCGGTTVTPKSLRTIAKKQVDYLLGDNPLKMSYMVGYGPSYPRRIHHRGSSLPSIALNPAKIQCTVGFSLMNSESPDPNILVGAVVGGPDINDGFLDERSDHEQSEPATYINAPLVGALAYLAHSFGQL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0485 547 PANTHER ENDO-1,4-BETA-GLUCANASE 62 542 - -
Glsi11g0485 547 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 440 466 IPR018221 -
Glsi11g0485 547 Pfam Glycosyl hydrolase family 9 84 537 IPR001701 GO:0004553|GO:0005975
Glsi11g0485 547 FunFam Endoglucanase 80 545 - -
Glsi11g0485 547 SUPERFAMILY Six-hairpin glycosidases 81 545 IPR008928 GO:0005975
Glsi11g0485 547 Gene3D - 79 547 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0485 Glsi-ChrGlsi11 3183713 3187784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0485 50 543 Glycoside Hydrolase AT1G02800 73.518 0.0 743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3367 02 81304135 81307767 Glsi11g0485 11 3183713 3187784 CCT
Glsi11g0485 11 3183713 3187784 Glsi11g0485 11 3183713 3187784 ECH