Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0260 ATGTCTTCTTTGAGCAGAGAATTGGTGTTTCTCATACTCCAATTTCTGGAGGAGGAGAAGTTTAAAGAGTCGGTGCACAAGCTTGAGAAAGAATCTGGGTTTTTCTTCAACATGAAGTACTTTGAAGAAAAAGTTCAGGCTGGAGAATGGGAAGAAGTTGAGAAGTACTTGTCAGGATTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAACAGAAATATCTGGAAGCTCTTGATCGGCAAGACAAGTCAACGGCTGTTGAGTTATTAGTTACTGATTTAAAAGTGTTCTCCACTTTTAATGAGGAACTATACAAAGAAATTACCCAGTTGTTAACTCTTAGTAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGCATTATGTTGTTGGAGCTTAAAAAACTCATAGAAGCAAATCCTCTTTTCCGTGATAAACTTCTCTTCCCTACTCTCAAGTCATCAAGGTTGCGGACGTTAATCAATCAAAGTTTGAACTGGCAGCACCAACTTTGCAAAAACCCTAGGCCAAACCCAGATATTAAGACTTTATTCAATGATCACACATGTACACCTCCTAATGGTCCTCTGGCACCCACACCTGTCAATCTTCCAGTTGCTGCAGTTGCAAAGCCTGCTACTTATACTTCACTTGGAGCTCATGGTCCCTTTCCACCCGTTGCAGCAAATGCTAATGCTAATGCTTTAGCCGGTTGGATGGCCAATGCCTCTGCTTCATCATCTGTCCAAGCAGCTGTTGTCACTGCATCATCCATACCGGTTCCACAGAATCAAGTGTCTATTTTGAAACGTCCAAGAACACCTCCTGCAACTCCTGGCATGGTTGATTATCAGAATCCTGATCATGAACAGCTAATGAAAAGGCTTCGACCTGCTCATCCTGTTGAGGAGGTTTCCTATCTTATAGCTCGGCAAGCTTCTTGGACACTGGATGATTTACCAAGAACAGTGGCTATGACTTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCCTCTCACTACACATTGCTTCTTGTTGGTTCTACTAACGGTGAAATTACCCTCTGGGAAATTGGGTTGCGTGAGAGGCTGGTCTCAAAGGCGTTCAAGATATGGGATACGTCGACAGGTCCATTGGCATTTCAGGCATCTTTTGTTAAAGAAGCACCTATTTCTGTTAGCCGCGTTACATGGAGCCCAGATGGAAATTTTGTGGGTGTTGCATTTAGCAAACATCTGATTCACTTGTATTCCTATACTGGTCCAAATGAATTAACCCAGCGTATACAGATTGATGCCCATAATGGTCGTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAATTATGTATCGTGACCTGTGGAGATGACAAGTTGATAAAGGTGTGGGAGTTGAGTGGGCGAAGGCTATTTATCTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCATAAAGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGGAAAATAAAGGCCTGGTTGTACGATAACATGGGTTCTAGAGTTGATTATGATGCCCCTGGTCATGGGTGTACCACTATGCTTTACAGTGTTGATGGCAGTAGATTGTTTTCTTGTGGGACAAGTAAAGATGGAGAATCTTTTCTAGTTGAATGGAATGAAAGTGAGGGAGCCATTAAGAGGACATACAATGGGTTCAGAAAGAAATCTGCTGGTGTTGTACAGTTTGATACAACCCAAAATCGCTTCTTGGCAGCAGGTGAAGATGGCCAAATAAAGTTTTGGGATATGGACAATGTTAATATTCAAACAAGCACTGACGCAGAGGGTGGACTACAGAGCCTTCCACGCTTGAGGTTCAATAAAGAAGGAAATCTTCTTGCCATTACGACTGTGGACAATGGATTCAAGATACTTGCTAATGCTGTTGGTCTTAGATCCTTGAGAGCAATTGAGGCTCCAGCATTTGAAGCATTGAGGTCTTCCGTTGAATCTGCTGCAATCAAGGGATCTGGCTCGTCTGCTGTTAATGTTAGTCCTGTCAACTTGAAAGTGGAAAGAAGCTCCCCTGTCAGGCCTTCTCCGGTCCTTAATGGAGCTGATCCCATGGGTCGAAGTGTGGAGAAACCAAGAACTGTGGAAGATGTAATAGACAGAGCTAAACCATGGCAGCTGTCTGAAATTGTGGATCCTGTCCAATGTCGGTTAGTTAACATGCCTGACAGCACAGGTTCTTCCTGCAAGGTCGTTCGACTTCTATACACAAATTCAGGTGGTGGTGTTTTGGCGCTTGGGTCAAATGGTACTCAGAAGCTGTGGAAGTGGGCTCGCAATGAACAAAATCCCACTGGGAAGGCCACTGCCAATGTTGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACAAATGATATCTCAGGTGTCAACCTTGAAGAAGCAGTTCCTTGCATTGCACTCTCAAAGAATGACTCTTATGTTATGTCTGCCTGTGGTGGAAAGGTATCACTATTTAACATGATGACGTTCAAGGTAATGACAACATTCATGCCACCGCCTCCTGCCTCCACCTTCTTAGCTTTCCATCCCCAAGATAACAACATCATAGCCATTGGGATGGAGGATTCATCCATTCACATTTATAATGTTAGAGTGGATGAGGTGAAAACAAATCTGAAGGGTCACCAGAAGCGTATTACTGGTTTAGCCTTTTCAACCAATCTCAACATATTGGTTTCTTCTGGTGCTGATGCTCACCTTTGTGTCTGGAGCATTGATACATGGGAGAAAAGAAAATCACTGGCAATACAATTACCTACGGGAAAGGCACCTATGGGGGATACCCGAGTGCAGTTCCATTCTGACCAACTCCGCTTGTTGGTAGTTCATGAGACTCAACTGGCAATATATGATGGCTCCAAGATGGATCGCATTCGGCAGTGGGTTCCAGAAGATGTTCTACCTGCTCCCATAACATATGCAGCTTATTCGTGCAACAGTCAGTTAATATATGCTACCTTTTCGGATGGTAACATTGGGGTTTTTGATGCTGATAGCTTGAGACTACGATGTCGGATTGCTCCATCAACATACTTGTCACAGGCAGGTCTAAATGGAAGCCAAGCTGTGTACCCTCTTGTTGTTGCGGCTCATCCACAAGAGCCGAACCAGTTTGCTGTGGGGATGAGTGATGGGTCAGTAAAGGTGATAGAGCCCATTGAATCAGAGGGTAAGTGGGGATCTGCTCCGCCTGTGGATAATGGAATATTGAACGCTAGGACAGCATCATCATCTACAACAAGCAACCACACTTCTGATCAGCCACAACGATAA 3390 0.4357 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKSTAVELLVTDLKVFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKTARSIMLLELKKLIEANPLFRDKLLFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFNDHTCTPPNGPLAPTPVNLPVAAVAKPATYTSLGAHGPFPPVAANANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSILKRPRTPPATPGMVDYQNPDHEQLMKRLRPAHPVEEVSYLIARQASWTLDDLPRTVAMTLHQGSSVTSMDFHPSHYTLLLVGSTNGEITLWEIGLRERLVSKAFKIWDTSTGPLAFQASFVKEAPISVSRVTWSPDGNFVGVAFSKHLIHLYSYTGPNELTQRIQIDAHNGRVNDLAFAHPNKQLCIVTCGDDKLIKVWELSGRRLFIFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHGCTTMLYSVDGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDNVNIQTSTDAEGGLQSLPRLRFNKEGNLLAITTVDNGFKILANAVGLRSLRAIEAPAFEALRSSVESAAIKGSGSSAVNVSPVNLKVERSSPVRPSPVLNGADPMGRSVEKPRTVEDVIDRAKPWQLSEIVDPVQCRLVNMPDSTGSSCKVVRLLYTNSGGGVLALGSNGTQKLWKWARNEQNPTGKATANVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTNLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKSLAIQLPTGKAPMGDTRVQFHSDQLRLLVVHETQLAIYDGSKMDRIRQWVPEDVLPAPITYAAYSCNSQLIYATFSDGNIGVFDADSLRLRCRIAPSTYLSQAGLNGSQAVYPLVVAAHPQEPNQFAVGMSDGSVKVIEPIESEGKWGSAPPVDNGILNARTASSSTTSNHTSDQPQR 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0260 1129 MobiDBLite consensus disorder prediction 1109 1129 - -
Glsi11g0260 1129 MobiDBLite consensus disorder prediction 705 724 - -
Glsi11g0260 1129 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Glsi11g0260 1129 Pfam WD domain, G-beta repeat 448 481 IPR001680 GO:0005515
Glsi11g0260 1129 Gene3D - 755 1100 IPR015943 GO:0005515
Glsi11g0260 1129 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Glsi11g0260 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Glsi11g0260 1129 MobiDBLite consensus disorder prediction 1094 1129 - -
Glsi11g0260 1129 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Glsi11g0260 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Glsi11g0260 1129 Gene3D - 326 533 IPR015943 GO:0005515
Glsi11g0260 1129 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Glsi11g0260 1129 FunFam Topless-related protein 3 730 964 - -
Glsi11g0260 1129 SMART WD40_4 904 943 IPR001680 GO:0005515
Glsi11g0260 1129 SMART WD40_4 861 901 IPR001680 GO:0005515
Glsi11g0260 1129 SMART WD40_4 999 1035 IPR001680 GO:0005515
Glsi11g0260 1129 SMART WD40_4 1049 1090 IPR001680 GO:0005515
Glsi11g0260 1129 SMART WD40_4 441 482 IPR001680 GO:0005515
Glsi11g0260 1129 SMART WD40_4 822 858 IPR001680 GO:0005515
Glsi11g0260 1129 SMART WD40_4 395 435 IPR001680 GO:0005515
Glsi11g0260 1129 SMART WD40_4 484 525 IPR001680 GO:0005515
Glsi11g0260 1129 SMART WD40_4 335 374 IPR001680 GO:0005515
Glsi11g0260 1129 SMART WD40_4 528 571 IPR001680 GO:0005515
Glsi11g0260 1129 SMART WD40_4 574 614 IPR001680 GO:0005515
Glsi11g0260 1129 Gene3D - 534 664 IPR015943 GO:0005515
Glsi11g0260 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 484 IPR001680 GO:0005515
Glsi11g0260 1129 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1113 IPR027728 GO:0006355
Glsi11g0260 1129 SUPERFAMILY WD40 repeat-like 334 655 IPR036322 GO:0005515
Glsi11g0260 1129 SMART Lish 4 36 IPR006594 GO:0005515
Glsi11g0260 1129 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Glsi11g0260 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Glsi11g0260 1129 SUPERFAMILY WD40 repeat-like 826 1091 IPR036322 GO:0005515
Glsi11g0260 1129 SMART ctlh 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0260 Glsi-ChrGlsi11 1769783 1780208 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3642 02 83149380 83159799 Glsi11g0260 11 1769783 1780208 CCT
Glsi11g0260 11 1769783 1780208 Glsi11g0260 11 1769783 1780208 ECH