Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3642 ATGTCTTCTTTGAGCAGAGAATTGGTGTTTCTCATCCTACAGTTTCTGGAAGAGGAGAAGTTTAAAGAGTCGGTGCACAAGCTTGAGAAAGAGTCCGCGTTTTTCTTCAACATGAAGTACTTTGAGGAAAAAGTTCATGCTGGAGAATGGGAAGAAGTTGAGAAATACCTATCAGGGTTTACTAAAGTTGATGATAACAGATACTCCATGAAGATATTCTTTGAAATCAGGAAACAGAAGTATCTGGAAGCGCTTGATGGGCAAGACAAGGCAAAGGCCGTTGAGATATTAGTAAACGATTTAAAAGTATTCTCCACTTTCAACGAGGATCTATTCAAAGAAATCACCCAGCTGTTAACTCTTAATAATTTCAGGGAGAATGACCAGCTGTCCAAGTATGGGGACACCAAAACTGCTCGAAGCATTATGTTGATAGAGCTGAAAAAATTGATAGAAGCAAATCCTCTTTTTCGTGATAAGCTTCTCTTTCCTACTCTTAAGTCATCAAGATTGAGGACATTAATCAATCAGAGTTTGAATTGGCAACACCAACTTTGCAAAAATCCAAGGCCAAACCCAGATATTAAGACTTTGTTTACAGATCACACATGTTCGCCTCCTAATGGTCCTCTAACAGCAACACCTGTCAATCTTCCAGTTGCTGCAGTTGCAAAGCCTGCTGCTTATCCTTCACTTGGAGCTCATGGTCCATTCCCACCTGCTGCGGCTACTGCTAATGCTAATGCTTTAGCTAGTTGGATGGCCAATGCTTCTGCTTCATCATCTGTCCAAGCAGCAGTTGTCACTGCATCATCCATACCAGTTGTACAGAATCAAGTGTCTATTTTGAAACGTCCAAGAACACCTCCAGCAACTCCTGGCATGGTTGATTATCAGAATCCTGATCATGAACAGTTAATGAAGAGGCTTCGTCCTGCTCATTCTGTAGAGGAGGTTTCCTATCCTACAGCTCGACAAATGTCTTGGTCACTGGATGATCTGCCAAGAACAGTGGCTATGACGCTGCATCAAGGATCCTCTGTTATAAGCATGGATTTTCATCCTTCTCGCCCCACATTGCTTCTTGTTGGTTCTAATAATGGTGAAATTACCCTTTGGGAACTTGGGTTGCGGGAGAGGCTGGTATCAAAGCCATTCAAGATATGGGATATTTCAGCAACCTCAATGGCATTTCAGACAAGTGCTGTGAAAGATGCACCGTTTTCTGTCAGCCGTGTTATGTGGAGCCCAGATGGAAATTATGTGGGTGTTGCATTTACCAAACATTTGATTCATTTGTATGCCTACACTGGGTCAAATGAACTGAGCCAGCGTTTGGAGATTGACGCCCATACTGGTGGAGTGAATGACTTGGCATTTGCTCATCCAAATAAACAACTATGTCTTGTGACATGTGGAGACGATAAGACGATAAAGGTGTGGGAGTTAAATGGACGAAGACTATTTAACTTTGAGGGGCATGAAGCACCTGTGTATTCTATCTGTCCTCATCACAAAGAGAACATTCAGTTTATTTTTTCAACTGCCATTGATGGAAAAATAAAGGCCTGGCTGTATGATAACATGGGTTCTAGAGTTGACTATGATGCCCCTGGTCACTGGTGTACTACAATGCTTTACAGTGCTGATGGAAGTAGATTATTTTCTTGTGGAACAAGTCAAGATGGAGAATCTTTCCTAGTTGAATGGAACGAAAGTGAAGGAGCCATTAAGAGGACATATAACGGGTTCAGAAAGAAATCTGCTGGTGTTGTGCAGTTTGATACAACCCAAAATCGACTTTTGGCGGCAGGTGAAGATGGTCAAATAAAGTTTTGGGATATGGACAATGTTAATCTTCTAACAAGCTCTGATGCTGAGGGTGGACTGCAGAACCTTCCACGCATGAGATTTAATAAGGAAGGAAATCTTCTTGCTGTTACTACTGTGGACAATGGATTCAAGATACTTGCTAATGCTACTGGTCTTAGATCCTTAAGAGCAAAAGAAACTTCAGCATTTGAAGCATTGAGGTCACCTATTGAATCTGCTGCAATCAAGGTATCTGGCTCCTCTGCTGTAAATGTCAGTCCTGTGAACTGTAAAGTCGAGAGGAGCTCCCCTGTCAGGCCTTCTCCGATCCTTAATGGAGTTGACCCCATGAGTCGAAGTGTGGAGAAACCAAGAACTGTGGAAGATGCAATAGATAGAACTACACCGTGGCAGCTGACTGAAATTTTGGATGCTATCCAGTGTCGGTTAGTTTCCATGCCTGATAATGCAGATGCTTCCAGCAAGGTTGTTCGACTTTTATATACGAATTCTGGTGTTGGTGTTTTGGCACTTGGGTCAAATGGTATTCAGAAGCTGTGGAAGTGGGCTCGCAATGAACAGAATCCCTCTGGGAAGGCCACTGCCAGTGTTGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATATCTCTGGTGTCAACCTTGAGGAAGCAGTTCCTTGCATTGCGCTCTCAAAGAATGACTCATATGTTATGTCTGCCTGTGGTGGAAAGGTTTCATTATTTAACATGATGACATTCAAGGTTATGACAACATTTATGCCACCACCTCCTGCCTCTACCTTTCTTGCTTTCCATCCTCAGGATAATAACATCATAGCCATTGGAATGGAGGATTCAACCATTCATATTTATAATGTTAGAGTGGATGAGGTCAAATCAAAATTGAAGGGTCACCAGAAGCGAATTACTGGTTTAGCCTTTTCTACCAATCTCAACATCCTAATTTCATCTGGTGCTGATGCTCAACTTTGTGTGTGGAGCATTGACACATGGGAGAAAAGAAAATCAATGACAATTCAACTACCTGTGGGAAAGGCTTCTGTTAGTGATACCCGAGTACAATTCCATTCTGACCAACTCCGCTTATTGGTAGTTCATGAGACTCAGTTGGCAATATATGATGCTTCCAAAATGGATCGCATTCGGCAGTGGATTCCACAAGATCTTCTGCCTGCTGCCATATCATATGCGACTTACTCCTGCAACAGTCAGTTAATATATGCTACCTTCTGCGACGGTAACATTGGGGTTTTTGATGCTGATAGCTTGAGACTAAGATGTCGTATTGCTCCATCATCATACTTATCACAGGCAGCTTTAAGTGGAAGCCAAGCTGTGTACCCTCTCGTTGTTGCAGTTCATCCACTAGAGCCCAACCAGTTTGCTGTTGGATTGACTGATGGATCTGTCAAAGTGATAGAGCCCACTGAATCAGAGGGTAAATGGGGAACTTCCCCTATGGATAATGGAATGTTGAATGGTAGGCCAGCATCATCATCTACTACAAGCAACCACACGCCTGATCAGGCACAAAGATAA 3387 0.4263 MSSLSRELVFLILQFLEEEKFKESVHKLEKESAFFFNMKYFEEKVHAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVNDLKVFSTFNEDLFKEITQLLTLNNFRENDQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLLFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCSPPNGPLTATPVNLPVAAVAKPAAYPSLGAHGPFPPAAATANANALASWMANASASSSVQAAVVTASSIPVVQNQVSILKRPRTPPATPGMVDYQNPDHEQLMKRLRPAHSVEEVSYPTARQMSWSLDDLPRTVAMTLHQGSSVISMDFHPSRPTLLLVGSNNGEITLWELGLRERLVSKPFKIWDISATSMAFQTSAVKDAPFSVSRVMWSPDGNYVGVAFTKHLIHLYAYTGSNELSQRLEIDAHTGGVNDLAFAHPNKQLCLVTCGDDKTIKVWELNGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSQDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRLLAAGEDGQIKFWDMDNVNLLTSSDAEGGLQNLPRMRFNKEGNLLAVTTVDNGFKILANATGLRSLRAKETSAFEALRSPIESAAIKVSGSSAVNVSPVNCKVERSSPVRPSPILNGVDPMSRSVEKPRTVEDAIDRTTPWQLTEILDAIQCRLVSMPDNADASSKVVRLLYTNSGVGVLALGSNGIQKLWKWARNEQNPSGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILISSGADAQLCVWSIDTWEKRKSMTIQLPVGKASVSDTRVQFHSDQLRLLVVHETQLAIYDASKMDRIRQWIPQDLLPAAISYATYSCNSQLIYATFCDGNIGVFDADSLRLRCRIAPSSYLSQAALSGSQAVYPLVVAVHPLEPNQFAVGLTDGSVKVIEPTESEGKWGTSPMDNGMLNGRPASSSTTSNHTPDQAQR 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3642 1128 ProSitePatterns Trp-Asp (WD) repeats signature. 601 615 IPR019775 -
Glsi02g3642 1128 MobiDBLite consensus disorder prediction 1093 1128 - -
Glsi02g3642 1128 Gene3D - 314 534 IPR015943 GO:0005515
Glsi02g3642 1128 SUPERFAMILY WD40 repeat-like 967 1095 IPR036322 GO:0005515
Glsi02g3642 1128 MobiDBLite consensus disorder prediction 1107 1128 - -
Glsi02g3642 1128 Pfam WD domain, G-beta repeat 448 481 IPR001680 GO:0005515
Glsi02g3642 1128 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Glsi02g3642 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Glsi02g3642 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Glsi02g3642 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 484 IPR001680 GO:0005515
Glsi02g3642 1128 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1106 IPR027728 GO:0006355
Glsi02g3642 1128 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Glsi02g3642 1128 SMART ctlh 34 92 IPR006595 -
Glsi02g3642 1128 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Glsi02g3642 1128 FunFam Topless-related protein 3 730 964 - -
Glsi02g3642 1128 Gene3D - 828 1101 IPR015943 GO:0005515
Glsi02g3642 1128 Gene3D - 559 691 IPR015943 GO:0005515
Glsi02g3642 1128 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 403 948 IPR011047 -
Glsi02g3642 1128 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Glsi02g3642 1128 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Glsi02g3642 1128 SMART Lish 4 36 IPR006594 GO:0005515
Glsi02g3642 1128 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 339 440 IPR011047 -
Glsi02g3642 1128 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 448 484 - -
Glsi02g3642 1128 SMART WD40_4 993 1035 IPR001680 GO:0005515
Glsi02g3642 1128 SMART WD40_4 904 943 IPR001680 GO:0005515
Glsi02g3642 1128 SMART WD40_4 822 858 IPR001680 GO:0005515
Glsi02g3642 1128 SMART WD40_4 484 525 IPR001680 GO:0005515
Glsi02g3642 1128 SMART WD40_4 394 435 IPR001680 GO:0005515
Glsi02g3642 1128 SMART WD40_4 439 482 IPR001680 GO:0005515
Glsi02g3642 1128 SMART WD40_4 1049 1090 IPR001680 GO:0005515
Glsi02g3642 1128 SMART WD40_4 574 614 IPR001680 GO:0005515
Glsi02g3642 1128 SMART WD40_4 861 901 IPR001680 GO:0005515
Glsi02g3642 1128 SMART WD40_4 528 571 IPR001680 GO:0005515
Glsi02g3642 1128 SMART WD40_4 335 374 IPR001680 GO:0005515
Glsi02g3642 1128 MobiDBLite consensus disorder prediction 705 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3642 Glsi-ChrGlsi02 83149380 83159799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3642 447 656 Miscellaneous Gene Families AT5G08390 25.234 1.18e-06 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3642 02 83149380 83159799 Glsi11g0260 11 1769783 1780208 CCT
Glsi02g3642 02 83149380 83159799 Glsi02g3642 02 83149380 83159799 ECH