Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0234 ATGGCACACGCTCCACAAACCCTTGTATCTACCGACTCCGAACCTGATGAAACTCCTCCTCCAGGTCCTCTTTCTCCTCCGACTCAAAACCCCTCTTCTCCCAACCCCATGAAGAATCCGGATTCGACCCCAATTCCGACCCTCCTCCATCTCTCCTTCAATCAGGACTCTGGTTGCTTCGCTGTGGGCACGGATCATGGTTTCCGTATCTATAACTGCGACCCGTTCCGCGAGATCTTTCGACGGGATTTTGGTCCGGGTGGTGGAATTGGATTGGTTCAGATGTTGTTTCGGTGCAACATACTTGCTTTCGTCGGTGGTGGGGCCGACCCAATTTACCCAAGTAATAAAGTGATGATTTGGGACGACCATCAGTCCCGGTGCATCGGGGAGCTATCATTTCGATCGGAGGTTAAAGGGGTTCGTCTCAGAAGGGACCGAATTGTGGTGGTTCTGGTGCATAAGATATTTGTATACAATTTCGCTGATCTTAAAGTGTTGCACCAAATTGAAACAATTGCGAACCCAAAGGGACTTTGTGAGGTTTCGCATGTTTCAGGGACAATGGTATTGGTCTGTCCTGGGTTGCAGAAGGGTCAGGTGAGGGTCGAGCATTATGCTTCAAAGCGGACCAAGTTTATAATGGCGCACGATTCCAGAATAGCTTGCTTCGCGCTTACGCAGGATGGGCGGTTGCTTGCCACCGCAAGCAGCAAGGGAACTCTGATTAGGGTTTTTAATACTTTGGATGGTTCATTGCTGCAAGAGGTACGGAGAGGTGCAGACCGAGCAGAGATATATAGCCTTGCTTTCTCTGCTACTGCACAGTGGCTAGCTGTCTCAAGTGACAAAGGAACTGTTCATGTCTTCAACCTAAAGGTTGATTCAGGATTATTGGGGCATGACAGAGACAGAGTGCATAATGCATCTGAATCTAATCCTGCTAACCCATCGGCAGTTTCATCTCTTTCATTTATAAAAGGTGTGTTGCCCAGGTATTTTAGTTCAGAATGGTCTGTGGCCCAGTTTCGCTTGCATGAAGGTTTGCAATATATTGTTGCCTTTGGCCATCAAAAGAACACAATTGTAACACTTGGGATGGATGGAAGCTTCTATCGGTGCCAGTTTGACCCGGTAAATGGTGGAGAGATGAGCCAAATTGAATATTATAACTTCCTGAAGCCAGAAGAAACATTCTAG 1200 0.475 MAHAPQTLVSTDSEPDETPPPGPLSPPTQNPSSPNPMKNPDSTPIPTLLHLSFNQDSGCFAVGTDHGFRIYNCDPFREIFRRDFGPGGGIGLVQMLFRCNILAFVGGGADPIYPSNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLVHKIFVYNFADLKVLHQIETIANPKGLCEVSHVSGTMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGRLLATASSKGTLIRVFNTLDGSLLQEVRRGADRAEIYSLAFSATAQWLAVSSDKGTVHVFNLKVDSGLLGHDRDRVHNASESNPANPSAVSSLSFIKGVLPRYFSSEWSVAQFRLHEGLQYIVAFGHQKNTIVTLGMDGSFYRCQFDPVNGGEMSQIEYYNFLKPEETF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0234 399 SUPERFAMILY WD40 repeat-like 46 373 IPR036322 GO:0005515
Glsi11g0234 399 Pfam WD domain, G-beta repeat 260 291 IPR001680 GO:0005515
Glsi11g0234 399 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 46 392 - -
Glsi11g0234 399 SMART WD40_4 207 247 IPR001680 GO:0005515
Glsi11g0234 399 SMART WD40_4 250 291 IPR001680 GO:0005515
Glsi11g0234 399 SMART WD40_4 336 375 IPR001680 GO:0005515
Glsi11g0234 399 MobiDBLite consensus disorder prediction 16 41 - -
Glsi11g0234 399 Gene3D - 42 381 IPR015943 GO:0005515
Glsi11g0234 399 FunFam Autophagy-related protein 18a isoform A 46 378 - -
Glsi11g0234 399 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0234 Glsi-ChrGlsi11 1576999 1580443 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3209 02 80398178 80399299 Glsi11g0234 11 1576999 1580443 CCT
Glsi11g0234 11 1576999 1580443 Glsi11g0234 11 1576999 1580443 ECH
Glsi02g3319 02 81049679 81053119 Glsi11g0234 11 1576999 1580443 ECH