Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g2427 ATGTGCTGGACAGACGACAAAGTGACTGAAATTTGGGGAACTAAAGATGGGTCCCAGACACTTACTTCAAGTGTAGGCCTCCTTTCTAAATTCGTGTCCCCACATCGCACGTGTAAGCACGAGCCCCGCGCTTTCCACACACATCGATTAAGTTCGAGCTCAACCCTTTATATCTTGACCCCCAAATCCGAAACCTTCGCTGCCCTTCGACGCTTCGCAAATCGCAACGCATATTCACTTCTCATTCTCCATTTCTCTCTCTTTTTCTTTCTTTCCTCCTTGCCGGAACCGGCCATGGATATACATAGCCGGCGCCACCACAATCCTTCCTGTCGGGCGACATCTCATGACCGCGCTGCTTCGTCCCTTCATCCTCCTCACCACCTCAAAAAGCCTTCCTCCGTCGTCAACGGCAGCCGTCGATTTCCATCTCCTCCCCCTAAAGCCTCCGATGCCCTCCCCCTGCCGTTATACTTAACCAATGCCATTTTCTTCACGCTCTTCTTCTCTGTTGCCTATTATCTTCTCCACCGCTGGCGTGACAAGATCAGGAACTCCACCCCGCTTCATGTTGTTACCTTTTCTGAGATCGCCGCCATTGTGTCCCTTATTGCTTCCTTCATTTATTTACTGGGCTTCTTCGGCATTGATTTCGTACAGTCCTTCATCGCGCGTGCCTCCCACGATGTTTGGGACCTTGAGGATGAGGCCGACGCTGATGCCGAATCTTGTTCGCACCACTGCCACCGCCGTGAATTCGTCATTGATCAGCCGATTCCTGAATTGGTTGATGCCGAGCCCTTGATTTCGTCTATTTCTTCCGAGGAAGATGAAAAGATTGTCGAATCCGTGCTGGATGGGACAACCCCATCGTATTCACTCGAGTCCAAGCTCGGTGACTGTAAGCGTGCGGCGGCTATTCGACGCGAGGCCTTGCAGATAATGACTGGGAGATCTCTTCAGGGTTTACCTTTGGATGGGTTTGATTACGATTCGATTTTAGGGCAGTGCTGTGAAATGCCGGTGGGTTATGTACAGATTCCTGTGGGAGTCGCTGGGCCCTTGTTGCTTGATGGGTTCGAGTATACGGTACCAATGGCGACCACTGAAGGGTGTCTGGTAGCCAGCGCTAACAGAGGCTGTAAAGCCATTTATGCCTGTGGTGGGGCGACCAGCATAGTGTTGAGGGATGGGATGACCAGGGCACCTGTTGTAAGGTTCGCCACAGCCAAAAGGGCTTCGGAGTTGAAGTTTTTCTTGGAAGATCCTCTCAATTTTGATACCTTGGCTGTCGTTTTTAATAGGTCTAGTAGATTTGCTAGGCTTCAAAGTATTCATTGTTCTATGGCTGGGAAGAACCTTTATATGAGATTCAGCTGCAGCACAGGTGATGCAATGGGGATGAACATGGTTTCCAAAGGCGTGCAGAATGTTCTTGATTTTCTTCAAAATGATTTCCCGGACATGGATGTTATTGGCCTCTCTGGAAATTATTGTTCGGACAAGAAACCTGCTGCTGTAAATTGGATTGAGGGACGTGGCAAGTCGGTTGTTTGTGAAGCAATTATTAAAGAAGAAGTGGTTAAGAAGGTATTGAAGACCAGTGTGGCTGCCTTGGTGGAGCTTAACATGCTCAAAAACCTTGCTGGCTCTGCTGTTGCTGGCGCTCTTGGTGGATATAATGCTCATGCCAGCAACATTGTTTCTGCCATTTTTATAGCCACTGGTCAAGATCCAGCGCAAAATGTTGAGAGTTCTCATTGCATAACCATGATGGAAGCCATCAATGATGGGAGAGACCTTCATATTTCAGTGACTATGCCTTCCATTGAGGTGGGCACGGTTGGAGGTGGGACTCAGCTGGCATCTCAGTCTGCTTGCTTGAATTTGCTTGGTGTGAAGGGTGCGAGCAAGGATTCCCCAGGATCAAACTCAAGACTCTTGGCCACCATTGTTGCTGGGTCAGTCTTAGCAGGAGAGCTGTCGCTGATGTCTGCCATTGCTGCAGGTCAACTTGTTAGAAGTCACATGAAATACAACAGATCAAGCAAAGATGTGTCCAAAGTGTCATGTTGA 2076 0.4899 MCWTDDKVTEIWGTKDGSQTLTSSVGLLSKFVSPHRTCKHEPRAFHTHRLSSSSTLYILTPKSETFAALRRFANRNAYSLLILHFSLFFFLSSLPEPAMDIHSRRHHNPSCRATSHDRAASSLHPPHHLKKPSSVVNGSRRFPSPPPKASDALPLPLYLTNAIFFTLFFSVAYYLLHRWRDKIRNSTPLHVVTFSEIAAIVSLIASFIYLLGFFGIDFVQSFIARASHDVWDLEDEADADAESCSHHCHRREFVIDQPIPELVDAEPLISSISSEEDEKIVESVLDGTTPSYSLESKLGDCKRAAAIRREALQIMTGRSLQGLPLDGFDYDSILGQCCEMPVGYVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASANRGCKAIYACGGATSIVLRDGMTRAPVVRFATAKRASELKFFLEDPLNFDTLAVVFNRSSRFARLQSIHCSMAGKNLYMRFSCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGLSGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTSVAALVELNMLKNLAGSAVAGALGGYNAHASNIVSAIFIATGQDPAQNVESSHCITMMEAINDGRDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVRSHMKYNRSSKDVSKVSC 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g2427 691 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 457 471 IPR023076 GO:0004420
Glsi10g2427 691 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 398 514 IPR009023 -
Glsi10g2427 691 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 666 679 IPR023076 GO:0004420
Glsi10g2427 691 Pfam Hydroxymethylglutaryl-coenzyme A reductase 305 681 IPR002202 GO:0004420|GO:0015936
Glsi10g2427 691 Gene3D - 398 514 IPR009023 -
Glsi10g2427 691 CDD HMG-CoA_reductase_classI 278 681 IPR004554 GO:0004420|GO:0005515|GO:0008299
Glsi10g2427 691 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 146 685 IPR002202 GO:0004420|GO:0015936
Glsi10g2427 691 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 277 681 IPR002202 GO:0004420|GO:0015936
Glsi10g2427 691 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 273 347 - -
Glsi10g2427 691 Gene3D - 268 347 IPR023282 GO:0004420
Glsi10g2427 691 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 273 670 IPR009029 GO:0015936|GO:0016616
Glsi10g2427 691 Gene3D - 348 676 IPR023074 GO:0004420
Glsi10g2427 691 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 612 619 IPR023076 GO:0004420
Glsi10g2427 691 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 398 514 - -
Glsi10g2427 691 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 503 676 - -
Glsi10g2427 691 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 337 358 IPR002202 GO:0004420|GO:0015936
Glsi10g2427 691 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 546 572 IPR002202 GO:0004420|GO:0015936
Glsi10g2427 691 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 600 621 IPR002202 GO:0004420|GO:0015936
Glsi10g2427 691 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 455 473 IPR002202 GO:0004420|GO:0015936
Glsi10g2427 691 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 364 384 IPR002202 GO:0004420|GO:0015936
Glsi10g2427 691 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 495 520 IPR002202 GO:0004420|GO:0015936
Glsi10g2427 691 MobiDBLite consensus disorder prediction 103 148 - -
Glsi10g2427 691 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 277 681 IPR004554 GO:0004420|GO:0005515|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g2427 Glsi-ChrGlsi10 21875446 21883675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g2427 97 687 Lipid Metabolism Gene Families AT1G76490 74.667 0.0 910
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g2427 10 21875446 21883675 Glsi05g1201 05 61568092 61571234 ECH
Glsi10g2427 10 21875446 21883675 Glsi10g2427 10 21875446 21883675 ECH