Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g1201 ATGGACGTTCGCCGGCGACCCATTAACTCCGTCCGTTCAAACTCTGCCGGCGAACCTCTCAAACACCAGAAGCTTGCCCATTATCTCCCACAGAAGCATGTCAAAGCTCCAACTTCCGATTCGCAGGCGCTGCCATTGGTGCCGCTTTACCTCACCAACAGCATCTTCTTCAGCCTGTTCTTCTCCGTGGCTTACTTTCTCCTTCACAGGTGGCGTGAGAAGATCCGCACTTCCACTCCTCTCCATGTCGTCACCCTCTCCGAGATTGCGGCCATTCTTTCCTTCGTCGCCTCCGTCATTTACCTTTTGGGTTTCTTTGGCATTGGCTTCGTCCACACAATCAATTCTCGTGCTTCCTCTGATGACGAGCTCGAATTAGATGATGACGACGCCATCATTTCTAAAGATGATAGCCCCACTCCTGGCCCTTGCCCGGCTGGTGTCATTGATTACCCTGCTGTCTCTCTTCCACCGCCTCAGACCCAGACGCAGAGGGCGGTGGTTTCTGCACCGCCACCCAAAGTTTTTGACAGTACGTCAGTTTCTCTCTCTCAGGATGACGAAGAAATCGTTAAGTCGGTGGTATCTGGGTCGATTCCTTCGTACTCGCTGGAATCGAAGCTGGGTGATTGTCAAAGAGCGGCGGCGATTCGAAGAGAGGCGGTGCAGAGAACTACTGGAAGGTCACTGCAGGGCTTGCCGACAGAAGGGTTCGATTTCGAGTCCATATTGGGACAGTGCTGTGAAATGCCTATCGGGTACGTGCAGATCCCTGTGGGGGTGGCGGGGCCATTGTTGCTCGATGGGGTAGAGTTCACAGTGCCCATGGCCACCACGGAGGGTTGCCTTGTTGCTAGCACCAACAGAGGTTGCAAGGCCATTTACGTTTCCGGTGGGGCTTCTTCCAGTCTTCTAAGGGATGGGATGACCAGAGCTCCTGTTGTTAGGTTCTCCACTGTCAAGAGAGCTGCTCAATTGAAGTTCTTCTTGGAGGATCCTGTCAATTTTGACTCGCTTGCTGTCGTTTTCAACAAGTCAAGCAGATTTGCCAGGTTACAGAATGTTCAGTGTACAATAGCAGGCAAGAACTTATACATCAGATTCCGGTGTAGCACTGGGGACGCCATGGGAATGAACATGGTATCCAAAGGTGTCCAAAATGTCCTTGATTTTCTTCAGGCTGACTTCCCGGACATGGATGTTATCGGCATCTCTGGAAATTTCTGTTCGGACAAAAAAGCAGCAGCTGTAAACTGGATTGAAGGGCGTGGTAAGTCTGTGGTATGTGAGGCTACCATCAAGGAAGAGGTGGTAAAGAAAGTATTGAAGACAAGCGTGGAGGCCCTGGTGGAGCTTAACATGCTTAAAAACCTTACTGGCTCAGCCATGGCTGGTGCTCTTGGCGGGTTCAATGCCCACGCAAGCAATATTGTATCTGCTATCTACATAGCCACTGGTCAGGATCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTGTGAACGACGGCAAGGACCTTCACGTCTCTGTCACCATGCCTTCCATTGAGGTGGGTACAGTTGGAGGGGGCACACAGCTCGCATCTCAGTCAGCTTGTCTTAATTTACTTGGTGTGAAGGGGGCCAGCAAAGAGTCTCCTGGTGCAAATTCTAGGCTATTGGCCACCATAGTAGCTGGCTCGGTCCTCGCCGGGGAGCTTTCCCTCATGTCTGCCATAGCAGCAGGACAGCTTGTTAAGAGTCACATGAAATACAACAGATCTAGCAAGGATGTCTCCACGGTTGTCTCTTGA 1806 0.515 MDVRRRPINSVRSNSAGEPLKHQKLAHYLPQKHVKAPTSDSQALPLVPLYLTNSIFFSLFFSVAYFLLHRWREKIRTSTPLHVVTLSEIAAILSFVASVIYLLGFFGIGFVHTINSRASSDDELELDDDDAIISKDDSPTPGPCPAGVIDYPAVSLPPPQTQTQRAVVSAPPPKVFDSTSVSLSQDDEEIVKSVVSGSIPSYSLESKLGDCQRAAAIRREAVQRTTGRSLQGLPTEGFDFESILGQCCEMPIGYVQIPVGVAGPLLLDGVEFTVPMATTEGCLVASTNRGCKAIYVSGGASSSLLRDGMTRAPVVRFSTVKRAAQLKFFLEDPVNFDSLAVVFNKSSRFARLQNVQCTIAGKNLYIRFRCSTGDAMGMNMVSKGVQNVLDFLQADFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEATIKEEVVKKVLKTSVEALVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAVNDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVSTVVS 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g1201 601 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 367 381 IPR023076 GO:0004420
Glsi05g1201 601 Gene3D - 308 424 IPR009023 -
Glsi05g1201 601 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 31 595 IPR002202 GO:0004420|GO:0015936
Glsi05g1201 601 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 187 591 IPR004554 GO:0004420|GO:0005515|GO:0008299
Glsi05g1201 601 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 411 586 - -
Glsi05g1201 601 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 576 589 IPR023076 GO:0004420
Glsi05g1201 601 Pfam Hydroxymethylglutaryl-coenzyme A reductase 215 591 IPR002202 GO:0004420|GO:0015936
Glsi05g1201 601 Gene3D - 182 257 IPR023282 GO:0004420
Glsi05g1201 601 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 405 430 IPR002202 GO:0004420|GO:0015936
Glsi05g1201 601 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 456 482 IPR002202 GO:0004420|GO:0015936
Glsi05g1201 601 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 274 294 IPR002202 GO:0004420|GO:0015936
Glsi05g1201 601 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 365 383 IPR002202 GO:0004420|GO:0015936
Glsi05g1201 601 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 510 531 IPR002202 GO:0004420|GO:0015936
Glsi05g1201 601 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 247 268 IPR002202 GO:0004420|GO:0015936
Glsi05g1201 601 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 187 591 IPR002202 GO:0004420|GO:0015936
Glsi05g1201 601 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 522 529 IPR023076 GO:0004420
Glsi05g1201 601 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 308 424 - -
Glsi05g1201 601 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 178 580 IPR009029 GO:0015936|GO:0016616
Glsi05g1201 601 Gene3D - 258 586 IPR023074 GO:0004420
Glsi05g1201 601 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 183 257 - -
Glsi05g1201 601 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 308 424 IPR009023 -
Glsi05g1201 601 CDD HMG-CoA_reductase_classI 188 591 IPR004554 GO:0004420|GO:0005515|GO:0008299
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g1201 Glsi-ChrGlsi05 61568092 61571234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g1201 1 597 Lipid Metabolism Gene Families AT1G76490 69.868 0.0 851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g2427 10 21875446 21883675 Glsi05g1201 05 61568092 61571234 ECH
Glsi05g1201 05 61568092 61571234 Glsi05g1201 05 61568092 61571234 ECH