Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g1865 ATGGTTCCCTATATAATAAAAGCTCTTAGCTTTGTTATGACTCTTTCTCACCGGTTTTTAAGTGAACGAGCAAGGCAGAGAGAAAAAGAGAGAGAGAGCGCGCGCGCGCGAGCAAGAGAAAGACAGGGGAAGGGAGAGATGTTTCGCGGTGGAGTGGTAGGATCATTGTTGAGGAGGAGCAAAGATGTTATCAGTGGGACGTACAAACCGAGCAGGTCGAGGCCCACCATTTCTTCGTCTACTGAAGAATCATTAAGATTTCTGACCCTGGCCTTCGCGACGCGAGGCATTGCTTTCATGGCTCATCATGTGCCATGCGTGAGAAATTTTTGTAGTATGGTGTCTTCTGGGGCAGAACATAAGGAGGGATTGAAGTTGCTGGTTACTGGGGGACCTCATGCTCAAAAACTGGTTGGAATATGGCTTTTGGGCTCTGCTGCATGGGTGTTTAGTATGGTGGTACTTGGGGGTGTTACTAGACTCACACAATCTGGTCTTTCAATGACTGATTGGAAATTAACTGGTAGTCTCCCTCCTTTGTCAGATGAAGAATGGTTGCAAGAGTTTGAGAAATATAAACAGTCACCTGAATACAAGCGATTGGGACTGAGACTTTCCACTCTGTTTGCCCTGGGAGCTGGCCAGGGTCTGGTTGGGTGGTGGATGGTTAAAAGTGGTTTAGAGGAACCAGCATCTGAATATTCTCAGCCTAGGGTAAGCCCCTATCGCCTTGCAGCTCATCTAACATCAGCATTTGCTATTTACTGTGGCCTCTTTTGGACTGGTCTTTCTGTTGTCATGCCCAAACCACTGGCTGAATCAGTAGCATGGATTCATGGGGCTGCTAAAGTGAAGAGACTTGCGCTGCCTATAAGCTTACTTGTTGGTCTGACTGCTGTCTCTGGTGCATTTGTTACCGGAAATGATGCTGGCCATGCCTTTAATACTTTTCCAAAGATGGGTGATACATGGATACCAGATGATATTTTTGATGAAGCTGGGGGGCACAGGCTACAGAATGAAGGGACTGTATGGAGTGCAGTGGCTCACATTATAACAGGTGTTATCGGGGCAGGGGTGCTGTCTCTGGCATGGTGTGTGGCACAGCTAGGGTGGGTTGCAGGCCCATTGTTCATCATACTGTTTGCAGCCACAACCTTTGTTTCAACATGCCTTCTCTGTGACTGCTATAGATTCCCTGATCCTGATTATGGAATCACTAGGATCCCCTCTTACATGGATGCTGTCAAACTGTACCTTGGAGAGACAAGGCAAAAGGTGTGTGGAATTCTGGTGCACGTGACCTTTTATGGGACCGGCGTTGCATATGTCATTACATCTGCTAACAGCATCAGCAAAAGTCTTGTAGAAGTTTTAGTTTGTAGCCTCACCTCAGATAGTTTCACAGCTTCAAAACTGCGTCAGCTACCTGTTTTGCACACATTTAATAGCAGGAAAGTGCCATATTCAAAGGTTAGTGTCTCATATGCCTTGAGTCGCTCATTGAAGATACACAACCACATTAGCACATGCCCATTTTCAGATTTCAGATTAATATATACTAACCCATCCTGCAGCTGCTCTGTCCGTCAAGCTATATGGGCAGACTCCGATGAATTGCCCTACCCTTAG 1632 0.4645 MVPYIIKALSFVMTLSHRFLSERARQREKERESARARARERQGKGEMFRGGVVGSLLRRSKDVISGTYKPSRSRPTISSSTEESLRFLTLAFATRGIAFMAHHVPCVRNFCSMVSSGAEHKEGLKLLVTGGPHAQKLVGIWLLGSAAWVFSMVVLGGVTRLTQSGLSMTDWKLTGSLPPLSDEEWLQEFEKYKQSPEYKRLGLRLSTLFALGAGQGLVGWWMVKSGLEEPASEYSQPRVSPYRLAAHLTSAFAIYCGLFWTGLSVVMPKPLAESVAWIHGAAKVKRLALPISLLVGLTAVSGAFVTGNDAGHAFNTFPKMGDTWIPDDIFDEAGGHRLQNEGTVWSAVAHIITGVIGAGVLSLAWCVAQLGWVAGPLFIILFAATTFVSTCLLCDCYRFPDPDYGITRIPSYMDAVKLYLGETRQKVCGILVHVTFYGTGVAYVITSANSISKSLVEVLVCSLTSDSFTASKLRQLPVLHTFNSRKVPYSKVSVSYALSRSLKIHNHISTCPFSDFRLIYTNPSCSCSVRQAIWADSDELPYP 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g1865 543 PANTHER CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX15 200 366 IPR023754 GO:0006784|GO:0016020|GO:0016653
Glsi10g1865 543 Pfam Transmembrane amino acid transporter protein 342 456 IPR013057 -
Glsi10g1865 543 Pfam Cytochrome oxidase assembly protein 201 367 IPR003780 GO:0006784|GO:0016020|GO:0016653
Glsi10g1865 543 MobiDBLite consensus disorder prediction 23 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g1865 Glsi-ChrGlsi10 12989671 13002394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g1865 342 454 Organic Solute Cotransporters AT5G23810 58.621 3.65e-39 141
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0257 08 2427273 2434578 Glsi10g1865 10 12989671 13002394 CCT
Glsi10g1865 10 12989671 13002394 Glsi10g1865 10 12989671 13002394 ECH