Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1042 ATGTATAAAAGAATAAAGCTGTTGTTGTGTTGTGCTTTGGCACTTTCTATCAGACCAATGCTGTGTATCTTAAACTGTCCTCCAAACCTTTCCCACCTTTCATTTGTAACTCATCTTCTATGGTCAAATTCTAGTGGCACAGTTCACCTCCGGCACAGTTCACCTCCAGCACAGTTTTTTTTTTTTACGACTAACGACGTTTCCATTTCTGCCTCTACCCCTTCCTCTCTGCTGTCCAGTATATATTTCACTTTGCGCACAATTAAACTGTTCTGGGCATTAGCAGAAAAGGCAAAAATATTGTCTTTGTTCATCTTGTTTATCTATAGTGGTAGGGCTGAAATTGAAATGGTTGGCAAGGAGAACTTGAGGACCGAGGACTTAAACTTGTGCTTTGAGAAGCTTATGATGGTGGCCGGCGGTGGTGGGAGAGGAAATAGTGGCAGAGGAGTGAAAATGGAAGCTGGGGTGATCACGGAATGGAAAGATATTCCGGTGGAGCTTTTAATGCAAATTCTGTCCCTTGTGGATGATAAGACGGTGATAACAGCTTCTGGAGTCTGTCGTGGGTGGAGAGATGCTGTTTGCTTCGCCCTTTCTCGTTTATCATTCTCATGGTGTAACAAGAACATGAATAACTTGGTCCTGTCTCTTGCTCCTAAATTCACGAAATTACAAATTTTAATCCTTCGTCAAGACAAGCCTCAGCTAGAGGATAATGCTGTTGAGACTATTGCAAATTGCTGTCACAACCTGCAGATCCTGGACCTCAGCAAAAGTTTTAAGCTTACTGATCGGTCACTGTGTGCCTTGGCCCACAGATGTCCTGACCTTACAAATCTGAACATCAGTGGGTGTTCGGCATTCAGTGACATGGCTCTGGCTGGCCTAGCTAGTTTCTGCAGAAAATTGAAAGTTTTAAATCTCTGTGGATGTGTTAGAGCTGCATCTGACGCTGCATTACAGGCCATTGGACGTTACTGTAATCAGTTGCAGTCTTTGAACCTTGGATGGTGCGAAAATGTTGGTGATGTTGGAGTGATGAGTTTAGCAGCTGGGTGCCCTGGTCTTAGAACACTTGATTTATGTGGTTGTGTCCGCATAACAGATGACAGTGTGATTGCTTTGGCAAACGGATGTCCTCATCTGAGGTCCCTGGGGCTGTACTACTGTCAAAACATCACGGATAGAGCAATGTATTCTTTGGCCAGCAAACTGAATAACAGGAAATGGGGATCTGTGAAAGGAGGAAATGATGAGGATGGGCTAAGGACTCTCAATATTAGCCAATGTACAGCACTCACCCCCTCTGCTGTTCAAGCGCTGTGTGACTCATTCCCAGCACTTCACACCTGCTCGGGGAGGCATTCACTTATCATGAGTGGCTGTTTGAATTTGACTTCTGTGCATTGTGCTTGTGCTGGGCATGCACACCGTGCAATCACCGCTTTTCCTTATCCGGCTCATTGA 1470 0.4483 MYKRIKLLLCCALALSIRPMLCILNCPPNLSHLSFVTHLLWSNSSGTVHLRHSSPPAQFFFFTTNDVSISASTPSSLLSSIYFTLRTIKLFWALAEKAKILSLFILFIYSGRAEIEMVGKENLRTEDLNLCFEKLMMVAGGGGRGNSGRGVKMEAGVITEWKDIPVELLMQILSLVDDKTVITASGVCRGWRDAVCFALSRLSFSWCNKNMNNLVLSLAPKFTKLQILILRQDKPQLEDNAVETIANCCHNLQILDLSKSFKLTDRSLCALAHRCPDLTNLNISGCSAFSDMALAGLASFCRKLKVLNLCGCVRAASDAALQAIGRYCNQLQSLNLGWCENVGDVGVMSLAAGCPGLRTLDLCGCVRITDDSVIALANGCPHLRSLGLYYCQNITDRAMYSLASKLNNRKWGSVKGGNDEDGLRTLNISQCTALTPSAVQALCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAGHAHRAITAFPYPAH 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1042 489 Pfam Leucine Rich repeat 380 403 IPR001611 GO:0005515
Glsi08g1042 489 Pfam Leucine Rich repeat 328 351 IPR001611 GO:0005515
Glsi08g1042 489 Pfam Leucine Rich repeat 357 377 IPR001611 GO:0005515
Glsi08g1042 489 SUPERFAMILY RNI-like 195 470 - -
Glsi08g1042 489 SMART LRR_CC_2 275 300 IPR006553 -
Glsi08g1042 489 SMART LRR_CC_2 222 248 IPR006553 -
Glsi08g1042 489 SMART LRR_CC_2 328 353 IPR006553 -
Glsi08g1042 489 SMART LRR_CC_2 249 274 IPR006553 -
Glsi08g1042 489 SMART LRR_CC_2 420 445 IPR006553 -
Glsi08g1042 489 SMART LRR_CC_2 196 221 IPR006553 -
Glsi08g1042 489 SMART LRR_CC_2 380 405 IPR006553 -
Glsi08g1042 489 SMART LRR_CC_2 301 327 IPR006553 -
Glsi08g1042 489 SMART LRR_CC_2 354 379 IPR006553 -
Glsi08g1042 489 Gene3D - 160 194 - -
Glsi08g1042 489 CDD F-box_AtSKP2-like 160 207 - -
Glsi08g1042 489 Gene3D Ribonuclease Inhibitor 195 421 IPR032675 -
Glsi08g1042 489 PANTHER UNCHARACTERIZED 350 468 - -
Glsi08g1042 489 SUPERFAMILY F-box domain 156 196 IPR036047 GO:0005515
Glsi08g1042 489 Pfam F-box domain 161 196 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1042 Glsi-ChrGlsi08 7658041 7666191 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g1244 10 8416386 8418263 Glsi08g1042 08 7658041 7666191 CCT
Glsi08g1042 08 7658041 7666191 Glsi08g1042 08 7658041 7666191 ECH