Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0710 ATGGGTAGGAAAGGAATTCAACTATTTGATGACACAAGAGATGGATTCTTCTCTGTCTGCGATTTGGGGTCTCAATGGAATCGTCAAGATGGGTACTATCATCCCGGAGGCTTATTTGCCAGTGTTGGTCAGATGGGAATCGGATTTGGTATTCAACCGCAACCTAGTTCTTCTGATTCTCGGGACAACGGTGGCGTGAAACTTCCCTATACTGAATTGTTTGTCAAGTATGTGGAATCACCGGGGAAAGTTCGGATCTCTGGTGTTTCAGAGGAGGAAGAAATTCAGAGCAAGAAGGGTGGCCTTAAACTGAGAATTAAGATCAGAAATCCTTCGCTCAGGAGGTTGTTTAGTGGCGCAATAGCTGGGGCACTGTCCCGCACTGCCGTGGCTCCATTGGAAACTATAAGGACTCATCTAATGGTGGGGAGTAGCGGCCAATCTACTGGTGAAGTCTTCCACAATATTATTAAGACTGATGGGTGGAAGGGATTATTGAGGGGTAATCTCGTTAATGTGATTCGAGTTGCACCTAGTAAGGCCATAGAGCTATTTGCTTACGATACAGTTAACAAGAATCTATCGCCGAAGCCTGGTGAACAGCCCAAACTCCCTATTCCTGCATCATTAATTGCAGGTGCATGTGCTGGAGTTAGTTCAACTATATGCACATATCCTCTCGAATTACTCAAGACTCGACTAACTATCCAGAGAGGTGTTTATGATGGTCTACTTGATGCATTCTTGAAAATACTTAGAGAAGAAGGCCCTGCCGAACTTTATAGAGGCCTTGCTCCTAGTCTTATTGGGGTGATTCCATATGCTGCCACCAATTACTTTGCCTATGACACGTTACGGAAAGCATACCGAAAGGTGTTTAAGCAAGAGAAGATTGGCAACATTGAAACCCTTTTGATTGGATCAGCAGCTGGTGCTTTTTCAAGTAGTGCTACTTTTCCACTTGAAGTAGCTCGCAAGCATATGCAAGTGGGAGCTCTCGGTGGAAGGCAGGTTTACAAAAATGTGATACATGCCCTCGCAACCATACTTGAACAAGAAGGGATCCAGGGTTTATATAGAGGGCTGGGACCCAGCTGCATGAAGCTAGTGCCAGCCGCTGGAATCTCTTTCATGTGCTATGAAGCGTGCAAGGGGATTCTGGTTGAGAAAGATGACGAGGAATAG 1185 0.454 MGRKGIQLFDDTRDGFFSVCDLGSQWNRQDGYYHPGGLFASVGQMGIGFGIQPQPSSSDSRDNGGVKLPYTELFVKYVESPGKVRISGVSEEEEIQSKKGGLKLRIKIRNPSLRRLFSGAIAGALSRTAVAPLETIRTHLMVGSSGQSTGEVFHNIIKTDGWKGLLRGNLVNVIRVAPSKAIELFAYDTVNKNLSPKPGEQPKLPIPASLIAGACAGVSSTICTYPLELLKTRLTIQRGVYDGLLDAFLKILREEGPAELYRGLAPSLIGVIPYAATNYFAYDTLRKAYRKVFKQEKIGNIETLLIGSAAGAFSSSATFPLEVARKHMQVGALGGRQVYKNVIHALATILEQEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKGILVEKDDEE 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0710 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 288 IPR018108 -
Glsi10g0710 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 110 193 IPR018108 -
Glsi10g0710 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 298 386 IPR018108 -
Glsi10g0710 394 SUPERFAMILY Mitochondrial carrier 111 382 IPR023395 -
Glsi10g0710 394 Gene3D Mitochondrial carrier domain 108 392 IPR023395 -
Glsi10g0710 394 PRINTS Mitochondrial carrier protein signature 307 329 IPR002067 GO:0055085
Glsi10g0710 394 PRINTS Mitochondrial carrier protein signature 115 128 IPR002067 GO:0055085
Glsi10g0710 394 PRINTS Mitochondrial carrier protein signature 261 279 IPR002067 GO:0055085
Glsi10g0710 394 PRINTS Mitochondrial carrier protein signature 168 188 IPR002067 GO:0055085
Glsi10g0710 394 PRINTS Mitochondrial carrier protein signature 219 237 IPR002067 GO:0055085
Glsi10g0710 394 PRINTS Mitochondrial carrier protein signature 128 142 IPR002067 GO:0055085
Glsi10g0710 394 Pfam Mitochondrial carrier protein 112 194 IPR018108 -
Glsi10g0710 394 Pfam Mitochondrial carrier protein 204 291 IPR018108 -
Glsi10g0710 394 Pfam Mitochondrial carrier protein 298 389 IPR018108 -
Glsi10g0710 394 PANTHER SOLUTE CARRIER FAMILY 25 104 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0710 Glsi-ChrGlsi10 4524858 4527001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0710 1 393 Organic Solute Cotransporters AT4G32400 68.434 0.0 525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0710 10 4524858 4527001 Glsi08g1578 08 11336263 11339428 CCT
Glsi10g0710 10 4524858 4527001 Glsi10g0710 10 4524858 4527001 ECH