Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1578 ATGGGAAGGAGAGGTATTCAACCATTTGAAGACAAAAGTGATAGACTTTTTTCAATCTCTGATTTGGGGTCTCAATGGAGTCTTCAAGAGGGGTATTATCACCCCGGAGGCTTATTTGCCAGCGTCGGTCAGATGGGAATGGGGTTTGGTGTTCAACCCAACGCTTCTGATTCCCGCGACAATGGTAACGAGAAACTTCCCTATCCTGAATTGTACTTGAAGTATATGCAATCACAGGGTAAAGTCCAGATTGCTGGAGTTCAGGAGGAGGAAGGGATTAAGAGCAGTAAGAAGAATGGCCTTAAACTGAAAATTAAGGTCAGAAATCCTTCGCTGAGGAGGTTGATTAGTGGGGCGATAGCTGGGGCGGTGTCCCGCACTACCGTGGCACCTTTGGAGACTATAAGGACTCATTTAATGGTTGGGAGTAGCGGCCATTCTACTGGTGAGGTGTTCCGCAATATTATGAAGACTGATGGGTGGAAGGGATTGTTTAGGGGTAATTTCGTTAATGTCATTCGGGTTGCACCTAGTAAGGCCATAGAGCTATTTGCTTATGACACGGTTAACAAGAACCTATCACCAAAGCCAGGGGAACAGCCAAAACTACCTATTCCTGCATCATTAATTGCAGGTGCCTGTGCTGGAGTTAGTTCAACTATATGCACGTATCCTCTTGAGTTAGTCAAGACTCGACTAACTATTCAGAGAGGTGTTTATAATGGTCTATTTGATGCATTTGTAAAAATAATCCGAGAAGAGGGCCCTGGAGAACTATATAGAGGCCTCGCTCCCAGCCTTATTGGAGTAATTCCATATGCTGCAACCAACTACTTTGCCTACGACACTTTACGGAAAGCATACCGGAAAATGTTTAAGCAAGAGAAGATTGGCAACATTGAAACCCTTTTAATTGGATCAGCAGCTGGTGCTATTTCAAGCAGTGCCACTTTTCCACTTGAGGTAGCTCGCAAGCATATGCAAGTGGGAGCCCTCAGTGGAAGGCAGGTTTACAAAAATGTTATTCATGCCCTCGCAAGCATACTTGAAGAAGAAGGGATTCAGGGTTTATATAGAGGGCTGGGACCAAGCTGCATGAAGTTAGTGCCGGCTGCAGGAATCTCTTTCATGTGCTATGAAGCCTGCAAGAGGATACTGATTGAGAATGATGATGAGGAATAG 1182 0.4492 MGRRGIQPFEDKSDRLFSISDLGSQWSLQEGYYHPGGLFASVGQMGMGFGVQPNASDSRDNGNEKLPYPELYLKYMQSQGKVQIAGVQEEEGIKSSKKNGLKLKIKVRNPSLRRLISGAIAGAVSRTTVAPLETIRTHLMVGSSGHSTGEVFRNIMKTDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKNLSPKPGEQPKLPIPASLIAGACAGVSSTICTYPLELVKTRLTIQRGVYNGLFDAFVKIIREEGPGELYRGLAPSLIGVIPYAATNYFAYDTLRKAYRKMFKQEKIGNIETLLIGSAAGAISSSATFPLEVARKHMQVGALSGRQVYKNVIHALASILEEEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKRILIENDDEE 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1578 393 FunFam Adenine nucleotide transporter BT1, chloroplastic/mitochondrial 107 390 - -
Glsi08g1578 393 Gene3D Mitochondrial carrier domain 106 391 IPR023395 -
Glsi08g1578 393 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 192 IPR018108 -
Glsi08g1578 393 SUPERFAMILY Mitochondrial carrier 110 381 IPR023395 -
Glsi08g1578 393 PRINTS Mitochondrial carrier protein signature 127 141 IPR002067 GO:0055085
Glsi08g1578 393 PRINTS Mitochondrial carrier protein signature 114 127 IPR002067 GO:0055085
Glsi08g1578 393 PRINTS Mitochondrial carrier protein signature 218 236 IPR002067 GO:0055085
Glsi08g1578 393 PRINTS Mitochondrial carrier protein signature 306 328 IPR002067 GO:0055085
Glsi08g1578 393 PRINTS Mitochondrial carrier protein signature 167 187 IPR002067 GO:0055085
Glsi08g1578 393 PRINTS Mitochondrial carrier protein signature 260 278 IPR002067 GO:0055085
Glsi08g1578 393 PANTHER SOLUTE CARRIER FAMILY 25 103 386 - -
Glsi08g1578 393 ProSiteProfiles Solute carrier (Solcar) repeat profile. 297 385 IPR018108 -
Glsi08g1578 393 Pfam Mitochondrial carrier protein 203 291 IPR018108 -
Glsi08g1578 393 Pfam Mitochondrial carrier protein 297 389 IPR018108 -
Glsi08g1578 393 Pfam Mitochondrial carrier protein 111 193 IPR018108 -
Glsi08g1578 393 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 287 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1578 Glsi-ChrGlsi08 11336263 11339428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g1578 1 392 Organic Solute Cotransporters AT4G32400 68.957 0.0 534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0710 10 4524858 4527001 Glsi08g1578 08 11336263 11339428 CCT
Glsi08g1578 08 11336263 11339428 Glsi08g1578 08 11336263 11339428 ECH