Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0699 ATGTCAAAGGTCTTCGGCTTTACCGGAGGTGATGATTTTTACCCTGGGGGGTCAATGTACACTAACCCCAAGGAACCAAATCTCTTGTTGTCTCTTGGACATCATGTTGATGTTTACTTTCCTCCTCGGAAGAGATCACGCATCAGTGCTCCGTTTCTTCTCAGTGGAGAATGGTTTGAGCAGAAGCAGCAGACATCTATTGAAGCTCTGCCAGATGAATGCCTCTTTGAGATCTTTAGAAGGTTGCCTGGGGGCCAAGAGAGGAGTTCATGTGCTTGTGTTTCCAAGCGCTGGCTTCTGCTTCTAAGCAATCTTTGCAAAGATGAGATCTGCGGCAACAGAAACACCAGTCATGAGAATGATGTTAGTGGAAAGGAGGCTGATGATCAGGAATTTGGGGGTGATGGATACCTTTCCCGTAACTTGGAAGGAAAGAAGGCAACAGATGTTAGACTCGCTGCTATTGTTGTTGGGACTGCTTCTCGTGGTGGATTGGGAAAGCTTTCAGTCCGTGGGAGCAATTCAGACCGTGGGGTGACTAATCTTGGTCTCAAGGCAGTTGCCTGTGGATGCCCTTCTTTAAAGGTTCTTTCTCTCTGGAATGTTAGTACTATCGATGATGAAGGCCTAATTGCAATTTCTAGTGGATGTCACCAGTTAAAGAAGCTTGACCTTTACAATTGTCCCACAATTTCTGACAAGGCTTTGATTGCAGTTGCAAAGAACTGCCCCAATCTGACCGAGTTATCAATAGAATCATGTCCTAAAATTGGTAATGAAGGTCTACAAGCTATTGGGAAGTGTAGCTCCAATCTAAGGTCCATATCAATCAAGGATTGCACACTCGTTGGTGATCAGGGAATTGCTAGCCTATTTACTTCAGCCTCTTTAGTTCTGACCAAGGTGAAGCTCCAGGCCCTGACTATTTCTGATCTCTCTTTAGCTGTTATTGGACATTATGGCTTGGCAGTTACTGATCTTGACCTTAATTGCCTCCCAAATGTCAGCGAGAGAGGGTTCTGGGTCATGGGTAATGGTCATGGGTTGCAGAAGCTAAAATCACTCTTGATTGCATCCTGCCGAGGAGTAACAGATATTGGGCTTGATGCTTTAGGAAGGGGATGTCCTAATCTCAAACATTTTTGCCTCCATAAGTGTGCATTTCTATCAGACAAAGGGTTAGCATCTTTTGCCAAAGCTGCTGTGTCACTTGAGAGCCTGAAATTGGAGGAGTGCCACAGGATCACCCAATTTGGTTTTTTTGGTGTCCTTTTCAACTGTGGCGCCACATTGAAGTCTCTTGCACTGGTAAGCTGCTTTGGGATTAAGGATTTGACTTTGGTATTGCCTCATGTATCTCCTTGCAAGTCGCTTCTGTCATTATCAATTCGTAACTGTCCTGGATTTGGTAATGGCACCCTGGCTGTGCTGGGAAAGGTTTGCCCTCAGCTGCAGCAATTGGAATTGTGTGGACTTGAGGGAGTCACGGATGCTGGGTTTCTTCCAATGCTCGAGAGCTCAGAGGCTGGTCTGGTTAAAGTTAATCTTAGTGGTTGCATAAATCTGACGGACAAAGTAGTTTTGTCCTTGGCAAATATGCATGGTTGGACTCTTGAGGTGTTCAACATTGGTGGTTGTAAGAAGATCAGTGATGTTAGCTTGATGGCAGTTGCAGAAAATTGCCCATTGCTCTGTGATCTTGATGTTTCCAACTGTGCAATCTCTGACGCGGGGGTTACAGCTCTGGCACGTGCAAACCTGTTCAATTTGCAGATTCTTTCTCTGTCAGGTTGCTCTTTGGTTTCGAATAAGAGCCTGGCCGCTTTGAGAAAATTGGGCGAGACCCTTTTGGGATTAAATCTCCAGCACTGCAATGCAATCAGCAGACGCTCAGTTGACAGGCTTGTGGAACTTCTTTGGAGGTGTGACATCCTCTCTTAA 1941 0.4549 MSKVFGFTGGDDFYPGGSMYTNPKEPNLLLSLGHHVDVYFPPRKRSRISAPFLLSGEWFEQKQQTSIEALPDECLFEIFRRLPGGQERSSCACVSKRWLLLLSNLCKDEICGNRNTSHENDVSGKEADDQEFGGDGYLSRNLEGKKATDVRLAAIVVGTASRGGLGKLSVRGSNSDRGVTNLGLKAVACGCPSLKVLSLWNVSTIDDEGLIAISSGCHQLKKLDLYNCPTISDKALIAVAKNCPNLTELSIESCPKIGNEGLQAIGKCSSNLRSISIKDCTLVGDQGIASLFTSASLVLTKVKLQALTISDLSLAVIGHYGLAVTDLDLNCLPNVSERGFWVMGNGHGLQKLKSLLIASCRGVTDIGLDALGRGCPNLKHFCLHKCAFLSDKGLASFAKAAVSLESLKLEECHRITQFGFFGVLFNCGATLKSLALVSCFGIKDLTLVLPHVSPCKSLLSLSIRNCPGFGNGTLAVLGKVCPQLQQLELCGLEGVTDAGFLPMLESSEAGLVKVNLSGCINLTDKVVLSLANMHGWTLEVFNIGGCKKISDVSLMAVAENCPLLCDLDVSNCAISDAGVTALARANLFNLQILSLSGCSLVSNKSLAALRKLGETLLGLNLQHCNAISRRSVDRLVELLWRCDILS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0699 646 CDD F-box_AtTIR1-like 67 101 - -
Glsi10g0699 646 Gene3D Ribonuclease Inhibitor 449 646 IPR032675 -
Glsi10g0699 646 Gene3D - 60 112 - -
Glsi10g0699 646 FunFam EIN3-binding F-box protein 1 60 109 - -
Glsi10g0699 646 FunFam EIN3-binding F-box protein 1 137 255 - -
Glsi10g0699 646 SMART LRR_CC_2 243 268 IPR006553 -
Glsi10g0699 646 SMART LRR_CC_2 561 585 IPR006553 -
Glsi10g0699 646 SMART LRR_CC_2 481 506 IPR006553 -
Glsi10g0699 646 SMART LRR_CC_2 349 374 IPR006553 -
Glsi10g0699 646 SMART LRR_CC_2 269 294 IPR006553 -
Glsi10g0699 646 SMART LRR_CC_2 191 216 IPR006553 -
Glsi10g0699 646 SMART LRR_CC_2 375 400 IPR006553 -
Glsi10g0699 646 SMART LRR_CC_2 587 612 IPR006553 -
Glsi10g0699 646 SMART LRR_CC_2 455 480 IPR006553 -
Glsi10g0699 646 SMART LRR_CC_2 535 560 IPR006553 -
Glsi10g0699 646 SMART LRR_CC_2 401 426 IPR006553 -
Glsi10g0699 646 SMART LRR_CC_2 508 533 IPR006553 -
Glsi10g0699 646 SMART LRR_CC_2 217 242 IPR006553 -
Glsi10g0699 646 SMART fbox_2 70 111 IPR001810 GO:0005515
Glsi10g0699 646 FunFam EIN3-binding F-box protein 1 256 446 - -
Glsi10g0699 646 PANTHER UNCHARACTERIZED 304 417 - -
Glsi10g0699 646 FunFam EIN3-binding F-box protein 1 507 644 - -
Glsi10g0699 646 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Glsi10g0699 646 Pfam F-box-like 67 101 IPR001810 GO:0005515
Glsi10g0699 646 SUPERFAMILY RNI-like 177 419 - -
Glsi10g0699 646 SUPERFAMILY RNI-like 319 642 - -
Glsi10g0699 646 Gene3D Ribonuclease Inhibitor 242 448 IPR032675 -
Glsi10g0699 646 Gene3D Ribonuclease Inhibitor 141 241 IPR032675 -
Glsi10g0699 646 Pfam Leucine Rich repeat 242 265 IPR001611 GO:0005515
Glsi10g0699 646 Pfam Leucine Rich repeat 566 583 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0699 Glsi-ChrGlsi10 4470535 4473179 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0699 10 4470535 4473179 Glsi08g1592 08 11408915 11411629 CCT
Glsi10g0699 10 4470535 4473179 Glsi10g0699 10 4470535 4473179 ECH