Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1592 ATGTCCAAAGTCATCGGCTTTACCGCAGCAGTTGACGATTTTTGCCCAGGGGGATCAATATACACTAATCCCAAGGAATCTAAGCTCTTATTGTCTCTTGGCCACCATGTTGATGTTTACTTTCCTCCTAGGAAGAGATCTCGAATCACTGCTCCATTTGTTTTCAGTGGAGAGTGGTTTGAGCCGAAGCAGAAGACATCTATTGAAGCTTTGCCAGATGAATGCCTCTTCGAGATCTTTAGAAGGTTGCCTGTGGGCCAAGAGAGGAGTGCATGTGCTTGTGTTTCCAAGCGCTGGCTTATGCTTCTGAGCAGTATTTGTAAGGATGAAATATGCACCAGCAAAAGCACCAGCCATGAGAACAAGTTTAGTGAAAAGGAAGCTGATGATCAGGAATTTGGTGGTGATGGACACCTTTCCCGGAGCTTGGTAGGCAAGAAGGCTACAGATGTTAGACTTGCTGCCATTGCTGTTGGAACTGCTTCTCGTGGAGGACTGGGAAAGCTTTCAATCCATGGGAGCAGTTCAGATCGTGGGGTGACCAATCTAGGTCTCAAGGCAGTGGCCCATGGATGCCCTTCTTTAAAGGGTCTTTCTCTATGGGATATTGCTACTATTGGTGATGAAGGCCTAATTGAGATTGCTAGTGGATGTCATCAGTTAGAGAAGCTTGACCTTTGTAAGTGTCCCACAATTTCTGACGGTGCTTTAATTGCAGTTGCGAAGAACTGTCCAAATCTATCTGAGTTATCAATAGAATCATGCCCTAAAATTGGTAATGAAGGTCTACAAGCTATTGGGCAGTTTTGCCCCAATCTAAGGTCTATATCAATTAAGGACTGCACCAGTATTGGTGATCAGGGAATTTGTAGCCTGTTTTCTTCGCATTCTTTTGTTCTGACAAAGGCAAAGCTCCAGGAACTGACTATTTCTGATCTCTCTCTAGCTGTTATTGGACATTATGGCAAGGCAGTTACTGATCTTGTCCTTGATTGCCTCCCAAATGTTAGTGAGAGGGGTTTCTGGGTCATGGGTAATGGTCATGGGTTGCAGAAGCTAAAGTCACTCACAATAGTGTCCTGCCAAGGAGTTACAGATATTGGGCTTGAAGCTGTAGGAAAGGGCTGTCCAAATCTCAAATATTTCCACCTTCATAAATGTGCATTTCTATCAGACAATGGATTGTTATCATTTGCCAAAGGCGCTCTATCACTTGAGAGCCTACATTTGGAGGAGTGCCACAGGATCACCCAATTTGGGTTTTTTGGTGTTCTTTTAAACTGCAGTGCAAAATTGAAGGCTCTTGCTCTCGTTAGCTGCTTTGGGATCAAAGATATGAATTTGAGATTGCCTCTGGTTTCTCCATGCAAGTCACTGCAATCGCTAACAATCCGTAACTGTCCTGGATTTGGTAATGCTACCTTGGCTGTACTAGGAAAGTTGTGCCCTCAATTGCAGCATGTTGAATTGTGTGGACTTGAGCGAGTAACAGATGCTGGGTTTCTTCCACTGCTTGAGTGCTCTGAGGCTGGTCTGGTTAAGGTTAATCTTAGTGGTTGCATAAATCTGACAGACAGGGCAGTTTTCTCATTGGCCAATTCGCATGGTTGGACTCTTGAGGTGCTAAATCTTGATGGCTGCAAAAAGATCAGTGATGCTAGCTTGATAGCAATTGCAGGAAATTGCCCATTGCTCTCTGATCTTGATCTTTCGAAGTGCATCATTACTGATGCTGGGATTGCAGCCCTGGCAAGTTCAAACCAGTTCAATTTGCAAATCCTTTCGTTGTCAGCTTGCTCGTTGGTTTCAGATAGGAGCCTGCCTGCTTTGATAATATTGGGCCAGACCCTTTTGGGATTAAATATCCAGCGCTGCAATGCAATCAGCGGCAGATCTGTTGATGTGCTTGTGGAACTTCTCTGGAGGTGTGACATCCTTTCCTGA 1944 0.446 MSKVIGFTAAVDDFCPGGSIYTNPKESKLLLSLGHHVDVYFPPRKRSRITAPFVFSGEWFEPKQKTSIEALPDECLFEIFRRLPVGQERSACACVSKRWLMLLSSICKDEICTSKSTSHENKFSEKEADDQEFGGDGHLSRSLVGKKATDVRLAAIAVGTASRGGLGKLSIHGSSSDRGVTNLGLKAVAHGCPSLKGLSLWDIATIGDEGLIEIASGCHQLEKLDLCKCPTISDGALIAVAKNCPNLSELSIESCPKIGNEGLQAIGQFCPNLRSISIKDCTSIGDQGICSLFSSHSFVLTKAKLQELTISDLSLAVIGHYGKAVTDLVLDCLPNVSERGFWVMGNGHGLQKLKSLTIVSCQGVTDIGLEAVGKGCPNLKYFHLHKCAFLSDNGLLSFAKGALSLESLHLEECHRITQFGFFGVLLNCSAKLKALALVSCFGIKDMNLRLPLVSPCKSLQSLTIRNCPGFGNATLAVLGKLCPQLQHVELCGLERVTDAGFLPLLECSEAGLVKVNLSGCINLTDRAVFSLANSHGWTLEVLNLDGCKKISDASLIAIAGNCPLLSDLDLSKCIITDAGIAALASSNQFNLQILSLSACSLVSDRSLPALIILGQTLLGLNIQRCNAISGRSVDVLVELLWRCDILS 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1592 647 Gene3D Ribonuclease Inhibitor 243 447 IPR032675 -
Glsi08g1592 647 Gene3D Ribonuclease Inhibitor 570 645 IPR032675 -
Glsi08g1592 647 Gene3D Ribonuclease Inhibitor 448 507 IPR032675 -
Glsi08g1592 647 Gene3D Ribonuclease Inhibitor 508 569 IPR032675 -
Glsi08g1592 647 Pfam Leucine Rich repeat 270 289 IPR001611 GO:0005515
Glsi08g1592 647 Pfam Leucine Rich repeat 538 559 IPR001611 GO:0005515
Glsi08g1592 647 Pfam Leucine Rich repeat 243 266 IPR001611 GO:0005515
Glsi08g1592 647 Pfam Leucine Rich repeat 562 584 IPR001611 GO:0005515
Glsi08g1592 647 SUPERFAMILY F-box domain 62 105 IPR036047 GO:0005515
Glsi08g1592 647 CDD F-box_AtTIR1-like 68 105 - -
Glsi08g1592 647 SUPERFAMILY RNI-like 308 643 - -
Glsi08g1592 647 SUPERFAMILY RNI-like 179 417 - -
Glsi08g1592 647 FunFam EIN3-binding F-box protein 1 508 645 - -
Glsi08g1592 647 FunFam EIN3-binding F-box protein 1 138 256 - -
Glsi08g1592 647 PANTHER UNCHARACTERIZED 350 532 - -
Glsi08g1592 647 SMART fbox_2 71 112 IPR001810 GO:0005515
Glsi08g1592 647 SMART LRR_CC_2 376 401 IPR006553 -
Glsi08g1592 647 SMART LRR_CC_2 456 481 IPR006553 -
Glsi08g1592 647 SMART LRR_CC_2 509 534 IPR006553 -
Glsi08g1592 647 SMART LRR_CC_2 562 586 IPR006553 -
Glsi08g1592 647 SMART LRR_CC_2 350 375 IPR006553 -
Glsi08g1592 647 SMART LRR_CC_2 244 269 IPR006553 -
Glsi08g1592 647 SMART LRR_CC_2 482 507 IPR006553 -
Glsi08g1592 647 SMART LRR_CC_2 536 561 IPR006553 -
Glsi08g1592 647 SMART LRR_CC_2 402 427 IPR006553 -
Glsi08g1592 647 SMART LRR_CC_2 192 217 IPR006553 -
Glsi08g1592 647 SMART LRR_CC_2 270 295 IPR006553 -
Glsi08g1592 647 SMART LRR_CC_2 588 613 IPR006553 -
Glsi08g1592 647 SMART LRR_CC_2 218 243 IPR006553 -
Glsi08g1592 647 FunFam EIN3-binding F-box protein 1 257 447 - -
Glsi08g1592 647 FunFam EIN3-binding F-box protein 1 61 110 - -
Glsi08g1592 647 Gene3D - 61 112 - -
Glsi08g1592 647 Pfam F-box domain 71 108 IPR001810 GO:0005515
Glsi08g1592 647 Gene3D Ribonuclease Inhibitor 152 242 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1592 Glsi-ChrGlsi08 11408915 11411629 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0699 10 4470535 4473179 Glsi08g1592 08 11408915 11411629 CCT
Glsi08g1592 08 11408915 11411629 Glsi08g1592 08 11408915 11411629 ECH